Paramagnetospirillum magneticum: amb3108
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Entry
amb3108 CDS
T00305
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit/40 kD subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
mag
Paramagnetospirillum magneticum
Pathway
mag03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mag00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
amb3108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mag03021
]
amb3108
03400 DNA repair and recombination proteins [BR:
mag03400
]
amb3108
Enzymes [BR:
mag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
amb3108
Transcription machinery [BR:
mag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
amb3108
DNA repair and recombination proteins [BR:
mag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
amb3108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
IDH
Motif
Other DBs
NCBI-ProteinID:
BAE51912
UniProt:
Q2W2L3
LinkDB
All DBs
Position
complement(3363513..3364529)
Genome browser
AA seq
338 aa
AA seq
DB search
MIQKNWQELIKPNKLHVEPGADPQRTAIVVAEPLERGFGMTLGNSLRRVLLSSLQGAAVT
AIQIDGVLHEFSSIPGVREDVTDIILNIKTLGLRMHGEGPKRMHLRAVGPGEVTAGLIEV
GHDIEIMDPELVLCTLDEGAKLNIEFTVETGKGYVPASQNRPEDSPIGLIPIDAIFSPVR
KVAYKVENTRVGQVTDYDKLSMTVETNGAVTPDDAVALAARILQDQLQLFINFEEPTAVV
EEEKKDELPFNKNLLRKVDELELSVRSANCLKNDNIIYIGDLVQKTEAEMLRTPNFGRKS
LNEIKEVLAQMGLHLGMEIANWPPENIEELAKKLEEPY
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
gtgattcagaagaattggcaggaactgattaagcccaacaagctccatgtggagcccggg
gccgatccgcagcgtaccgccatcgtggtcgccgaaccgcttgagcgcggctttggtatg
acgcttggcaattccttgcgccgcgtgctgctgtcgtcgctgcagggtgccgccgtcacc
gccatccagatcgacggcgttctgcacgaattctcgtcgatccccggcgtgcgtgaggac
gtcaccgacatcatcctcaacatcaagaccctgggcctgcgcatgcatggcgaggggccg
aagcggatgcatctccgggccgtcggccccggcgaggtcaccgccggcttgatcgaggtt
ggtcacgacatcgagatcatggaccccgaactggtgctgtgcaccctggacgagggcgcc
aagctgaacatcgagttcacggtcgagaccggcaagggctatgtccccgcctcgcagaac
cgtcccgaggattcgccgatcggtctgatcccgatcgacgccattttctcgccggtgcgc
aaggtggcctacaaggtggaaaacacccgcgtgggccaagtcaccgattatgacaagctg
tccatgaccgtcgagaccaacggcgcggtcacgccggatgatgcggtggccctggccgcc
cgcatcctgcaggaccagctgcagctgttcatcaacttcgaggagcccaccgcggtcgtc
gaggaagagaagaaggacgaactgcccttcaacaagaacctgctgcgcaaggtggacgag
ctggagctttcggtccgttcggccaactgcctgaagaacgacaacatcatctatatcggc
gacctggtccagaagaccgaagccgagatgctgcgcactcccaatttcggtcgcaagtcg
ctgaacgagatcaaggaagtgctggcgcagatgggtctgcacctgggcatggaaatcgcc
aattggccgccggagaacatcgaagagctggccaagaagctggaagagccctactga
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