Paramagnetospirillum magneticum: amb3730
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Entry
amb3730 CDS
T00305
Name
(GenBank) Single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mag
Paramagnetospirillum magneticum
Pathway
mag03410
Base excision repair
mag03430
Mismatch repair
mag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
amb3730
03430 Mismatch repair
amb3730
03440 Homologous recombination
amb3730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mag03400
]
amb3730
DNA repair and recombination proteins [BR:
mag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
amb3730
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
amb3730
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
amb3730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Peripla_BP_6
ThiG
Motif
Other DBs
NCBI-ProteinID:
BAE52534
UniProt:
Q2W0U1
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All DBs
Position
4103797..4105590
Genome browser
AA seq
597 aa
AA seq
DB search
MSHGPSVIHQGPAFLGVERSLSGRRWLARPGDERLAQALAQRLALPELVGRVLASRGIGL
DEAESFLNPTLRDLLPDPGHLKGMDKAVERLVAAVTRGETIGIFGDYDVDGATSSALLRN
ALADMGAKARVYIPDRIKEGYGPNAPALLRLRDEGVAVVVTVDCGTTAFDALETATRAGL
DMIVVDHHVGEAALPAALAVINPNRLDETSPHGHLAAVGVAFLLAVGLNRGLKAAGWYQS
RPAPDLMRWLDLVALGTVCDVVPLVGVNRALVVQGLKVMAKRANVGLAALADVAGVKERP
DSYTLGYVLGPRVNAGGRVGEAELGTRLMSTDNPAEAAEIARQLDGYNKDRQEIEAVVLL
DAIEQVETRPDDGRPLLVAAGENWHPGVIGIVAGRLKERYGRVACVVALEGDQGKGSGRS
VPGLDLGSAIIAARQAGLLRAGGGHAMAAGFTVARDKLTALSDFLAERLQAQLEGDLVPL
LELDGALDAGAAGIELVETLAGVGPFGSGNPEPRFAISGARIAKADVVGSGHVRLILTGA
GGKRLKAIAFRAADSEMGHALLSSAGASFHLAGTLRVDTWQGNSSVQLIVDDAAFAR
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgagccacggaccgtcagtcatccaccaggggcccgccttcctgggggtcgagcgttcg
ctgtccgggcggcgctggctggcgcggccgggcgacgagcggctggcccaggccctggcc
cagcgcctcgccctgcccgaactggtgggccgcgtactggcgtcccgcggcatcggcctg
gacgaggcggaaagcttcctcaacccgacgctgcgcgacctgctgcccgatcccggccat
ctaaagggcatggacaaggcggtggagcggctggtcgcggcggtgacccggggcgagacc
atcggcatcttcggcgattacgacgtggacggcgccacctcctcggcgctgctccgaaac
gccctggccgacatgggggccaaggcccgcgtctatattcccgaccgtatcaaggagggc
tacggccccaacgcccccgctttgctgcggctcagggacgagggcgtcgccgtggtggtc
accgtcgattgcggcaccaccgccttcgacgccctggagaccgccacccgggcgggcctc
gacatgatcgtggtcgaccaccatgtgggcgaggccgccctgcccgccgccctggcggtg
atcaatcccaaccgcctggacgagaccagtccccacggccatctggccgcggtgggggtg
gccttcctgctggccgtagggctcaatcgcgggctgaaggccgccggctggtaccagtcg
cgccccgcccccgatctgatgcgctggctcgatctggtggccctgggcaccgtctgcgac
gtggtgccgctggtgggcgtcaaccgcgccctggtggtccagggcctgaaggtcatggcc
aagcgcgccaatgtgggcttggccgccctggccgatgtggccggcgtcaaggaacgcccg
gattcctacaccctgggctatgtgctggggccacgcgtcaatgccggcggccgggtgggc
gaggccgagctgggcacccgcctgatgtccaccgacaacccggccgaagccgccgagatc
gcccgccagctggacggctacaacaaggaccgccaggagatcgaggcggtggtgctgctc
gacgccatcgagcaggtggaaacccgccccgatgacggccgccccctgctggtggcggcg
ggcgagaactggcaccccggcgtcatcggcatcgtcgccggacgcctgaaggaacgctat
ggccgcgtcgcctgcgtggtggccctggaaggcgaccagggcaagggctcgggccgctcg
gtgcccggcctggacctgggctcggccatcatcgccgcccgtcaggcgggcctgctgcgg
gccggcggcggccatgccatggcggcgggcttcaccgtggcccgcgacaagctgaccgcc
ctctccgacttcctggccgaacgcctgcaggcccagttggagggggacctggtgcccctg
ctggaactggacggcgccctggacgccggcgcggcgggcatcgaactggtggagaccctc
gcaggggttggtcccttcggctcgggcaatccagaaccccgcttcgccatctccggcgcc
cgcatcgccaaggccgacgtggtgggctccggccatgtgcgcctgatcctgacgggagcc
ggcggcaagcgcctgaaagccatcgccttccgcgccgccgacagcgagatgggccacgcc
ctgctgtcctcggccggcgccagcttccatctggccggcacgctccgcgtcgacacctgg
caaggcaattccagcgtccagctgatcgtcgacgacgccgcttttgcccgctga
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