Paramagnetospirillum magneticum: amb3937
Help
Entry
amb3937 CDS
T00305
Name
(GenBank) DNA-directed RNA polymerase specialized sigma subunit
KO
K03092
RNA polymerase sigma-54 factor
Organism
mag
Paramagnetospirillum magneticum
Pathway
mag02020
Two-component system
mag02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mag00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
amb3937
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
amb3937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mag03021
]
amb3937
Transcription machinery [BR:
mag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
amb3937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Arg_repressor
Motif
Other DBs
NCBI-ProteinID:
BAE52741
UniProt:
Q2W084
LinkDB
All DBs
Position
4347950..4349461
Genome browser
AA seq
503 aa
AA seq
DB search
MAIGPRLDIRQTQSLVMTPQLQQAIKLLQLSNFELTAFIDQELERNPLLEREEGERGPEP
TEPKVDSTDLAVLDSAPAEAPLLDGMNGGSAEDGMDVDYDNTFNNDSASDAVQDESLGQW
GNVGGGGGGFDDGESNLEQMVAGEISLRDHLAAQVSMDIPDAGDRLIALHLIEMLDEAGY
LIGDLDELAERLGCPTERVLVVLKRVQGFDPVGVFARSLKECLGLQLAEKNRLDPAMQAL
LDNLELLARRDLPGLMKACGVDAEDMAEMIGEIKALDPKPALAFDHIVAQPVTPDVLMRR
TQDGAWVVELNSDTLPRVLVNTRYYSKIAGAARSKDDKTYISERFQSANWLVKSLHQRAT
TILKVATEIVRQQDAFFRLGVQHLRPLVLRDIATAISMHESTVSRVTSNKYMATPRGIYE
LKYFFTQAIGSADGGDAHSAESVRHRIKALIDAEGKSVLSDDSIVDALKAEGIDIARRTV
AKYREAMNIGSSVQRRREKSLGM
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggccatcggtcccaggcttgatattcgccagacccagtctctggtgatgaccccgcaa
ttgcagcaggccatcaagctgctgcaattgtccaatttcgagctgaccgccttcatcgac
caggagctggagcgcaatccgctgctggagcgcgaggaaggcgagcgcggccccgagccc
accgagcccaaggtggattccaccgatctggcggtgctcgactccgctccggccgaagcc
cccctgctggacggcatgaacggcggctcggccgaagacggcatggacgtggattacgac
aacaccttcaacaacgacagcgcctccgacgccgtccaggacgagtccctgggccaatgg
ggcaatgtgggcggcggcggcggcggcttcgacgacggcgagtccaacctggaacagatg
gtggcgggcgagatcagcttacgcgatcacttggcggcccaggtcagcatggacattccc
gacgcgggcgaccggctgatcgccctgcacctgatcgaaatgctggacgaggccggctac
ctgatcggcgacctggacgaactggcggaaaggctgggctgtcccaccgagcgcgtcctg
gtggtgctgaaaagagtccagggcttcgatccggtcggcgtcttcgcccggtcgctcaag
gaatgcctgggactgcagctggccgagaagaaccgcctcgaccccgccatgcaggccctg
ctggacaatctggaactgctggcccggcgcgacctgcccggcctgatgaaggcctgcggc
gtcgatgccgaggacatggccgagatgatcggcgagatcaaggcgctggaccctaagccg
gccttggccttcgaccatatcgtcgcccagccggtcacccccgacgtgctgatgcgccgc
acccaggacggcgcctgggtggtggaactgaactccgacaccctgccccgcgtgctggtc
aatacccgctattactccaagatcgccggcgcggcgcgcagcaaggacgacaagacctat
atctccgagcgcttccagtcggccaactggctggtgaagtcgctgcaccagcgcgccacc
accatcctcaaggtggccaccgagatcgtccgccagcaggacgccttcttccgcctgggg
gtccagcatctgcgcccgctggtgctgcgcgacatcgccaccgccatctccatgcacgaa
agcacggtcagccgcgtcacctccaacaagtacatggccacgccccgcggcatctatgaa
ctgaagtacttcttcacccaggccatcggctcggccgacggcggcgacgcccattccgcc
gaatcggtgcgccaccgcatcaaggcgctgatcgacgcagagggcaagagcgtgctgtcc
gacgattccatcgtcgacgcgctgaaagccgaaggcatcgacatcgcccgccgcacggtg
gcaaaataccgcgaagccatgaacatcggctcgtcggtccagcgccggcgggagaagtcg
ctgggcatgtga
DBGET
integrated database retrieval system
