Paramagnetospirillum magneticum: amb4117
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Entry
amb4117 CDS
T00305
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mag
Paramagnetospirillum magneticum
Pathway
mag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
amb4117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mag03019
]
amb4117
03016 Transfer RNA biogenesis [BR:
mag03016
]
amb4117
Enzymes [BR:
mag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
amb4117
Messenger RNA biogenesis [BR:
mag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
amb4117
Transfer RNA biogenesis [BR:
mag03016
]
Prokaryotic type
tRNA degradation factors
amb4117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_2
Motif
Other DBs
NCBI-ProteinID:
BAE52921
UniProt:
Q2VZQ4
LinkDB
All DBs
Position
4520986..4523148
Genome browser
AA seq
720 aa
AA seq
DB search
MSMFNVHRKEITWGGRKLVLETGKVARQADGAVMVTYGETSVLCTVVGAKSQKPGIDFFP
LTVNYQEKAFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFADGFRNEVQVVCTVL
SHDLENDPDIAALVGTSAALTISGLPFMGPVGAARVGYVDGAYVLNPLVGDLPKSELDLV
VAGTVEGVLMVESEAKQLSEDVMLGAVMFGHREFQAVIQAIIDLAEECAKDPWDLPEPPA
EVAVVTGKFNDAGVPAELAEAYKIIKKQDRYAAVGAVKKKALALLTEAAEIAVAGGILKH
LEADVVRGNILKTGVRIDGRDTKTVRAIEVEVGVLPRAHGSALFTRGETQALVVATLGTG
QDEQIIDQLAGEYREHFMLHYNFPPYSVGEAGRMGSPGRREIGHGKLAWRAMRPCLPAKE
SFPYTMRVVSEITESNGSSSMASVCGSSLALMDAGVPLPKPVAGIAMGLIKEGTDFAVLS
DILGDEDHLGDMDFKVAGTVDGVTALQMDIKITSITEEIMKIALGQAKDGRIHILGEMNK
GLDHARDSVSGNAPRITTISIPKEKIREVIGTGGKVIREICEQTGAKIDIDDDGTIKVAS
VDADAAQRAIDWIRGIVAEPELGVIYNGKVVKVVDFGAFVNFLGSRDGLVHISELARERV
AKTADVVKQGDVVKVKVLGFDDRGKVKLSMKQVDQTTGEDISAQLEAERAASKRERHHED
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgttcaatgtccaccgcaaggaaatcacctggggcggccgcaagctggttctg
gagaccggcaaggtcgcccgtcaggccgacggcgccgtgatggtcacctatggcgaaacc
tcggtgctgtgcaccgtggtgggcgccaagagccagaagcccggcatcgacttcttcccc
ctgacggtgaactaccaggagaaggcctttgccgcgggcaagatccccggtggcttcttc
aagcgcgaaggccgtccgagcgagaaggagaccctggtctcccgcctgatcgaccgcccg
atccgcccgctgttcgccgatggcttccgcaatgaagtgcaggtggtctgcaccgtgctg
agccacgacctcgagaacgatcccgacatcgccgccctggtcggcacctcggccgccctg
accatttccggcctgcccttcatgggcccggtgggcgcggcccgcgtcggctatgtggac
ggcgcctatgtgctgaacccgctggtcggcgatctgcccaagagcgagctggacctggtg
gtcgccggcaccgtcgaaggcgtgctgatggtcgaatccgaagccaagcagttgtcggaa
gacgtcatgctgggcgccgtgatgttcggccaccgcgagttccaggcggtgatccaggcg
atcatcgatctggccgaggaatgcgccaaggacccgtgggacctgcccgagccccccgcc
gaggtggcggtggtcaccggtaagttcaacgacgcgggcgtccccgccgaactggccgaa
gcctataagatcatcaagaagcaggaccgttacgccgccgtcggcgccgtgaagaagaag
gccctggccctgttgaccgaggcggccgagatcgccgtggccggcggcatcctgaagcac
ctggaagccgatgtcgtccgtggcaacatcctgaagaccggcgtgcgcatcgacggccgc
gacaccaagaccgtccgcgccatcgaggtcgaggtcggcgttctgccccgcgcccacggt
tccgccctgttcacccgcggcgagacccaggccctggtggtcgccactctgggcaccggc
caggacgagcagatcatcgaccagctggcgggcgagtaccgcgagcacttcatgctgcac
tacaacttccctccctactcggtgggtgaagccggccgcatgggttcgcccggccgccgc
gagatcggccacggcaagctggcctggcgcgccatgcgtccctgcctgccggccaaggag
agcttcccctacaccatgcgcgtggtgtcggagatcaccgagtccaacggctcgtcgtcc
atggcctcggtctgcggttcgtccctggccctgatggatgccggcgtgcccctgcccaag
ccggtggcgggtatcgccatgggtctgatcaaggaaggcaccgacttcgccgtgctgtcc
gacatcctgggtgacgaggatcacctgggcgatatggacttcaaggtggccggcaccgtc
gacggcgtcaccgccctgcagatggacatcaagatcacctcgatcaccgaggagatcatg
aagatcgccctgggtcaggccaaggacggccgtatccacatcctgggcgagatgaacaag
ggcctggatcacgcccgtgattcggtgtcgggcaatgcgccgcgcatcaccaccatctcc
atccccaaggagaagatccgcgaagtcatcggcaccggcggcaaggtcatccgcgagatc
tgcgagcagaccggcgccaagatcgacatcgatgacgacggcaccatcaaggtcgcctcg
gtggacgccgatgccgcccagcgcgccatcgactggatccgcggcatcgtcgccgagccc
gagctgggtgtgatctacaacggcaaggtcgtgaaggtcgtcgatttcggcgccttcgtg
aacttcctgggctcgcgcgatggcctggtccacatctcggagctggcccgcgagcgcgtc
gccaagaccgccgacgtggtcaagcagggcgacgtggtcaaggtcaaggtcctgggcttc
gacgaccgcggcaaggtgaagctgtccatgaagcaggtggatcagaccaccggcgaggac
atctccgcccagctggaagccgagcgcgccgcctccaagcgcgagcgtcaccacgaggat
tga
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