Microbulbifer agarilyticus: Mag101_04145
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Entry
Mag101_04145 CDS
T04709
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
maga
Microbulbifer agarilyticus
Brite
KEGG Orthology (KO) [BR:
maga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maga03019
]
Mag101_04145
Enzymes [BR:
maga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Mag101_04145
Messenger RNA biogenesis [BR:
maga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Mag101_04145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
NACHT
nSTAND3
AAA_30
ResIII
SLFN-g3_helicase
AAA_16
T2SSE
AAA_25
ABC_tran
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AQQ66918
UniProt:
A0A1Q2M2Z4
LinkDB
All DBs
Position
1006621..1010535
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AA seq
1304 aa
AA seq
DB search
MSSEPQNQPSPESVIQQCAQLLPQCMGRDRYRLKRSLSNARRRLKEGKPVDRMLAQLQGQ
LAESVALVEARKQKLPKVEWPEGLPVVARREEIAELIAANQVVVVAGETGSGKTTQLPKI
CLELGRGIVGQIGHTQPRRIAARTVANRIAEELGQSLGDSVGYQVRFTDQSTEHTHIKLM
TDGILLAEIQRDPLLNNYDTLIIDEAHERSLNIDFLLGYLKTILPKRPDLKLIITSATID
LEKFSRHFDDAPIIEVSGRTYPVDIHYQPPADSDADLNQQVIEAVEELLREEKSSSRRGG
DILVFMSGEREIRECAKALRDAQLPHIDVLPLYARLSLAEQSRVFAPHKGRRIVLATNVA
ETSITVPGIRYVIDPGTARISRYSYRSKIQRLPVEAISQASANQRAGRCGRVSAGVCIRL
YEESDFVQRPEFTDAEILRTNLAAVILQMLQLRIGDIREFPFVDPPDQRLINDGYSLLQE
LQAVDGKGAVTKMGRALSRLPLDPRLGRMLLESGPTKSLRELLIIVSALAVQDPRERPAE
KRQASDEKHKQWLHEQSDFLTLVNLWDGFEAQRQELSQNQLRKWCQKNFLSWLRLREWRD
IHHQLRVAIRDLELKMNPEPSDYASVHKAILPGLLGNLGVRDENKEFLGCRNRRFHVFPG
SGQFKKPPRWLVAAQLLETSRLFAHTVGKIEPDWVLGCSEHLVKRNYFEPHYNPRSGAVM
AFEKVTLYGLVLVDKQRIHYGKLDPVTSREVFIREALVEQRYRGKGKFIQHFKKLQEELE
DLEAKSRRRDIVVDDEVVYRFFDERVPADIVNLAGFEKWRKQAEQKDPQLLFIPRDLMMQ
QDAGHVGEAQFPDSLTSGGIEYPLSYHFEPGSVDDGVSIQVPVGALHQVPAARLQWVVPG
ILRDKCIALVKNLPKQYRKHFVPVPAAVDKALPRMQPDNTPLWQALAHELKRQTAQDLPE
DAWVSAEHGVEDFYRFNIQVQDENGRLLDQGRDLPELQARYRDRVQQELASAGDDFEREG
IIRWDFGDLPHTHQLDQGGLKVRAYPALIANKDSVDLKLLDNPDEAARFTRAGICRLALL
HLPEPVKYLRKELLKGKELGLSAADLGRREEVADDILMAAARECFWADENWPRSESEFVQ
ALEKREQLITIAQEIGELLIKTLAQLVPLRKKIKQQKNLAVAMAVGDINNQLSGLFYRGF
LFHTPLEWLRQYGRYLKGIELRLEKAALDPNRDRKLSGEFQQASEPYEGYAAGRDLQLLS
GDPRILQYRWMLEEFRVSLFAQTLKTLMPVSIKRLRKTWSEIQG
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atgagttccgaaccccaaaatcaacccagtcctgagtccgttatccagcagtgcgcgcag
ttgctgccgcagtgcatggggcgcgaccgctatcgcctgaagcgcagcctgagcaatgcg
cgtcggcgcctgaaagagggaaaacctgtggaccggatgctggcccaactgcaggggcag
ttggccgagtcggtggctttggtagaagcgcgcaagcagaagttgcccaaggtcgagtgg
cccgaagggctgccggtggtggcgcgccgcgaagaaattgccgagttgattgcggctaac
caggtagtggtggtagcaggcgaaaccggctccggtaaaaccacccagttaccgaagatc
tgtctcgaactggggcgcggtattgtcggtcagattggccacacgcagccacggcgaatt
gctgcgcgcaccgtggctaatcgtattgccgaagaactcgggcagtccttaggggattcc
gtcggctatcaggtgcgctttaccgatcagagtaccgagcacacccatatcaaattgatg
accgacggtattttactggcggaaatccagcgggacccgctgctcaacaattacgatacg
ctgattatcgatgaggcccacgagcgcagcctgaatatcgattttctgctgggctacctg
aaaaccattctgcccaagcgcccggatctcaaactcatcattacttctgcgaccatcgac
ctggagaaattctcccgacatttcgacgatgcgccgattatcgaagtctccggccgcact
tatccggtggacattcactatcagccacccgccgacagtgatgcggatctgaaccagcag
gtgattgaggccgtcgaggagttgctgcgagaggaaaaatcctcgtcccgtcgcggcggc
gacattctggtatttatgagtggcgagcgggaaattcgcgagtgtgccaaggcactgcgc
gatgcgcagctgccacatattgatgtattaccactgtatgcccgcctcagtctggccgag
cagagccgagtattcgcgccgcacaagggccgcagaattgtactggccactaatgtggca
gaaacctcgatcaccgttcccggtatccgttatgtgatcgatccgggtaccgcgcgtatc
agccgctacagctatcgcagcaaaatccaacgtttaccggtagaggccatctcacaggcc
agcgccaaccagcgcgcgggtcgctgtggtcgggtcagtgccggtgtgtgtattcgcctg
tacgaagagtccgactttgtgcagcggccggaatttaccgatgccgaaatcctgcgcaca
aatttggccgcggtgattttgcaaatgctgcagttgcgcatcggcgatattcgtgaattc
ccattcgtcgatcctccggaccagcgcctgatcaacgatggttatagcctgctgcaggag
cttcaagcggttgatggcaaaggtgcggttaccaaaatgggccgtgccctgtcacgccta
ccgctggatccgcgtctcgggcgcatgctgctggaatctggccccaccaaaagcttgcgc
gaactgctgatcattgtcagtgcgctcgcagtgcaggacccgcgcgaacgcccggcagaa
aaacgtcaggcctccgatgagaagcacaagcagtggctacacgagcagtccgacttcctc
actctggtgaatttgtgggatggctttgaagcacagcgccaggaactcagccagaaccag
ctacgcaagtggtgccagaaaaacttcctgtcctggctgcggctgcgcgaatggcgagac
atccaccaccagttgcgggtggctattcgcgatctggaattgaagatgaacccggagccc
tcggactacgccagtgtgcacaaggcgatcttgccggggttgcttggcaatctcggtgtg
cgtgatgaaaacaaggaattccttggctgtcgcaatcgccgctttcatgtattccccggg
tccgggcaattcaagaagccgccgcgctggctggtagctgcgcagttacttgaaaccagc
cgtttgtttgcgcacaccgttggcaaaatcgagccagactgggtgctgggttgctctgag
cacctggtaaaacgcaactatttcgagccccactacaatccgcgctctggcgcggtaatg
gcgtttgagaaggtgacgctgtacgggctggtgttagtcgataagcagcgcattcattac
ggtaagctcgatcccgtgacctcgcgcgaagttttcattcgcgaagccttggtggagcaa
cgttatcgtggcaagggcaagtttattcagcacttcaaaaaactacaggaagagctggaa
gatctcgaagcgaaatcccgtcgtcgagatatcgtggtcgatgatgaagtggtgtaccgc
tttttcgatgagcgtgtgcctgcagatattgtgaacctggcgggctttgaaaaatggcgc
aaacaggcagagcagaaagatccacagctgctgtttattccccgggacctgatgatgcag
caggatgcggggcatgtgggcgaggcacagttcccggattccctcaccagtggtgggatc
gaatatccgctcagctatcacttcgagccgggcagtgtcgacgacggtgtgagtattcag
gtgccggtaggcgcgttgcaccaggtgcctgcggcccgactgcagtgggtggtgccgggt
attttgcgtgataaatgtattgcgctggtgaaaaacctgcccaagcaataccgcaaacac
ttcgtgccggtgccggccgctgtggataaagctttgccgcgtatgcagccagacaatacc
ccgctgtggcaggcgctggcccatgaactgaagcgccagactgcacaggatcttccggaa
gatgcctgggtctctgcagagcacggtgtcgaagatttttaccgtttcaacattcaggta
caggatgaaaacggccgcctgctggaccaggggcgagacctgccggaactgcaggcacgc
tatcgcgatcgcgtgcaacaggaactcgccagtgccggtgatgatttcgaacgcgaaggc
attatccgttgggatttcggcgacctgccgcatacccatcagctggatcagggggggctg
aaggtgcgcgcctatcccgcgctgattgccaacaaagatagtgttgacctgaagctgctg
gataacccggatgaagcggcgcgttttacacgcgccggtatctgccgcctcgcgttactg
catctgcccgaaccggtgaaatatctgcgcaaggagctgctcaagggcaaagaactgggg
ttgagtgcggcagacctggggcgtcgcgaagaggtcgccgacgatattctgatggcggca
gcgcgtgagtgtttctgggcggacgagaactggcctcgtagtgagagcgagtttgttcag
gcgctggagaagcgcgaacagctgatcactatcgcgcaggaaatcggcgaactgctgata
aagacgctggcgcaactagtgcccctgcgtaagaaaattaaacaacagaaaaacctggcc
gtcgccatggcggtgggcgatattaacaatcagttgagcgggctcttctatcgcggtttc
ctgttccacaccccgcttgagtggctgcgtcagtacggtcgctacctgaaagggatagaa
ctgcgcctggaaaaggcagcgctcgacccgaaccgcgatcgcaagctcagcggtgagttc
cagcaggccagcgaaccctatgagggctatgccgccgggcgcgacctgcagttgctgtct
ggagacccgcgcatactgcagtaccgctggatgctggaggaatttcgcgtctccctgttt
gcgcaaaccctgaagaccctgatgccagtttcgatcaaacgattgcgtaagacctggtca
gaaattcagggttaa
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