Magnetospirillum sp. ME-1: WV31_06425
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Entry
WV31_06425 CDS
T04817
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
magn
Magnetospirillum sp. ME-1
Pathway
magn03030
DNA replication
magn03430
Mismatch repair
magn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
magn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WV31_06425
03430 Mismatch repair
WV31_06425
03440 Homologous recombination
WV31_06425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
magn03032
]
WV31_06425
03400 DNA repair and recombination proteins [BR:
magn03400
]
WV31_06425
Enzymes [BR:
magn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
WV31_06425
DNA replication proteins [BR:
magn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
WV31_06425
DNA repair and recombination proteins [BR:
magn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
WV31_06425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
DUF655
Motif
Other DBs
NCBI-ProteinID:
ARJ65311
LinkDB
All DBs
Position
1419826..1423290
Genome browser
AA seq
1154 aa
AA seq
DB search
MPSHADFVHLRVHTAYSLAEGAIKLKQLIKLCEKMAMPAIGIADTGNLFGALEFSTSCSD
AGIQPIVGAQIAIRREDGGPSKDGRKPEPDSLVLLCQSEGGYLNLLKLVSKAFLETDAGE
TPQVTLHDLETRSDGLIVLTGGPAGPVGRLLADGQGEKAEIVLARLARAFAGRCYVELQR
HGLEVEDRIEPTLVSLAYKHDLPLVATNEPFFADRGMYEAHDALICIAEGAYISQDERRR
LTPEHYFKSPEEMRELFADLPEACDNTMVIARRCAFGVSKRKPILPPYRMDGLTEAEVLR
KKTLEGLDLRLDKHVFQPGMTDDEKEHAAKPYRERVEFELNVIEQMGFPGYFLIVSDFIQ
WSKAHDIPVGPGRGSGAGSAVAWALTITDLDPLRWGLLFERFLNPERVSMPDFDIDFCQD
RREETIRYVQGKYGYAQVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRICKLVPNNPAN
PMTLEQALESEPLLAEQKERDETVSHLIDLAMKLEGLYRHASTHAAGVVIGDRSLDELVP
LYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVMVTAVKHVKKTKGLDIDLSAIPL
DDAKSYELLSRGDAAGVFQLESSGMRDVLRKMGPNRLEDLIAVVALYRPGPMDQIPRYIA
CKHGKEEPDYMHPLLEPILKETFGIMVYQEQVMQIAQVLSGYSLGGADLLRRAMGKKIKE
EMEAQRKTFVEGATARGVDGAQASMIFDKVAKFAEYGFNKSHAAAYALIAYQTAWLKANH
PAEFMAATMTYEMSNTDKLNSFRQELDRLGIKLLPPDINASQPTFSVEVLPDGSQAVRYA
LAALKNVGEAAMKSLVEERERDGRFKDMGDFAARMDSKVLNRRQLENMVKAGVFDSLDKN
RGRLFKNADTLCRYAAQAAEDRQSSQMSLLGGSNAPTLKLENGPDWSPHEKLNQEFEAVG
FYLSAHPLDAYAKSMKRLNVLKIAELPRHLQAGGKGRVRLAGSLLSKQERVSAKGSRYAF
LQFSDATGMFEVTCFSEILATSRDLLDAGGPLLIDVDAKLEEDQLRMTCQRIASLDQEAA
KAAAGIRVIISDDSALKQLSDLINNEARGRNRVAIVARAGNREVELGLKSTITLSPKFMG
SLRSIPGITEVEEI
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgccttcccatgccgacttcgtccatcttcgcgtccacaccgcctattccctggcggaa
ggggccatcaagctcaagcagctcatcaagctgtgcgagaagatggccatgcccgccatc
ggtatcgccgataccggcaacctgttcggcgccctggaattctccacctcgtgctcggat
gcgggcatccagcccatcgtcggcgcccagatcgcaatccggcgcgaagacggcggcccg
tccaaggacggacgcaagcccgagcccgattccctggtgctgctgtgccagagcgaaggc
ggctacctcaatctcctgaagctggtgtccaaggcctttctcgagaccgatgcgggcgag
accccccaggtcaccctgcacgacctggagacccgctcggacggcctgatcgtgctgacc
ggcggtcccgccgggccggtgggccgcctgctggccgacgggcagggggaaaaggccgag
atcgtgctggcgcgcctcgcccgcgccttcgccgggcgctgttacgtggagttgcagcgc
cacggcctggaggtggaggaccgcatcgagccgacgctggtctcgctcgcctacaagcac
gatttgcccctggtcgccaccaacgagccgttcttcgccgaccggggcatgtacgaggcc
cacgacgccctgatctgcatcgccgagggcgcctacatctcccaggacgagcgtcgccgc
ctcacgcccgagcactatttcaagtcgccggaagagatgcgggaattgttcgccgacctg
cccgaggcctgcgacaacacaatggtgatcgctaggcgctgcgccttcggcgtttccaag
cgcaagcccatcctgccgccttatcgcatggacggcctgaccgaggccgaggtgctgcgc
aagaagacgctggagggcctggacctgcggctggacaagcacgtcttccagcccggcatg
accgacgacgagaaggagcacgccgccaagccctaccgcgagcgcgtcgagttcgagctg
aacgtcatcgagcagatgggctttcccggctacttcctgatcgtgtccgacttcatccag
tggtccaaggcccacgacatccccgtggggccgggccgtggttcgggcgccggttcggcg
gtggcctgggctctgaccatcaccgatctcgatcccttgcgctgggggctgctgttcgag
cgcttcctcaatcccgaacgcgtctccatgccggacttcgatatcgatttctgccaggac
cgccgggaagagaccatccgctacgtccagggcaagtacggctatgcccaggtggcgcag
atcatcaccttcggaaagctgcaggcccgcgccgtgctgagggacgtgggccgcgtgctg
cagatgccctacggtcaggtggaccgcatctgcaagctggtgcccaacaatcccgccaac
cccatgacgctggaacaggcgctggagagcgagccgctgctggccgagcagaaggagcgg
gacgagaccgtctcccacctgatcgatctggccatgaagctggagggattgtaccgccac
gcctcgacccatgcggccggcgtggtgatcggcgaccggtccctggacgaactggtgccg
ctctatcgagacccgcgctccgacatgccggtcacccagttcaatatgaaatgggtggaa
tccgccggtctggtgaagttcgacttcctggggctcaagacgctcaccgtgatggtcacg
gcggtcaagcacgtcaagaagaccaaggggctggacatcgacctgtcggccatccccttg
gacgacgccaaatcctatgaactgctgtcgcggggcgacgcggccggcgtgttccaactg
gaaagttcgggcatgcgcgacgtgctgcgcaagatgggccccaaccgcttagaagacctg
atcgccgtggtggcgctgtaccgtcccggccccatggaccagattccgcgctacatcgcc
tgtaagcacggcaaggaagagccggactacatgcatccgctcctcgagcccatcctgaag
gaaaccttcgggatcatggtctaccaggagcaggtgatgcagatcgcccaggtgctgtcg
ggctattcgctcggcggcgccgatctgcttcgccgcgccatgggcaagaagatcaaggag
gagatggaggcccagcgcaagaccttcgtcgaaggcgccaccgccaggggcgtcgatggc
gcccaggcctccatgatcttcgacaaggtggccaagttcgccgaatacggcttcaacaag
tcccacgccgccgcctacgccctgatcgcctaccagaccgcctggctgaaggccaaccac
ccggccgagttcatggcggcgaccatgacctacgaaatgagcaacaccgacaagctcaat
tcgttccgccaggagctggaccgcctcggcatcaagctgctgccccccgacatcaacgcc
agccagcccaccttctcggtggaggtgctgcccgatggttcccaggcggtgcgctacgct
ctggcggccttgaagaacgtcggcgaggcggccatgaagtccctggtggaggagcgcgag
agggacggccgcttcaaggatatgggtgatttcgccgcgcgcatggattccaaggtgctc
aatcgtcgccagctggaaaacatggtcaaggccggcgttttcgattcgctggataagaat
cgcgggcggctgttcaagaatgccgacacgctgtgccgctacgccgcccaggccgccgag
gaccggcaaagcagccagatgagcctgctgggcggctccaacgccccgaccttgaagctg
gagaacggccccgactggtcgccgcacgagaagctcaaccaggaattcgaggcggtgggg
ttctacctgtccgcccatcccctggacgcctacgccaagagcatgaagcgcctcaacgtg
ctgaagatcgccgaactgccccgccacctccaggcgggcggcaagggcagggtacgcctg
gccggttcgctgttgtccaagcaggagcgcgtctcggccaagggctcgcgctacgccttt
ttgcagttttccgacgccaccggcatgttcgaggtcacctgtttctcggagatcctcgcc
acctcgcgggacttgctcgacgccggtgggccgttgctgatcgatgtggacgccaagctg
gaggaagaccagctgcgcatgacctgccagcgcatcgcgtcgctcgaccaggaagccgcc
aaggccgccgccggcatccgtgtcatcatctccgacgacagtgcgctgaagcagctctcg
gacctgatcaacaatgaggctcggggccgcaaccgcgtcgccatcgtggcccgggccggc
aaccgcgaggtggagctgggccttaaatccaccatcacgctttcgcccaaattcatgggc
agcttgcgcagcattcccggcatcaccgaggtggaggagatctga
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