Magnetospirillum sp. ME-1: WV31_18175
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Entry
WV31_18175 CDS
T04817
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
magn
Magnetospirillum sp. ME-1
Pathway
magn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
magn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WV31_18175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
magn03021
]
WV31_18175
03400 DNA repair and recombination proteins [BR:
magn03400
]
WV31_18175
Enzymes [BR:
magn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WV31_18175
Transcription machinery [BR:
magn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WV31_18175
DNA repair and recombination proteins [BR:
magn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WV31_18175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
Peptidase_M23
Apocytochr_F_C
TNFAIP8
Motif
Other DBs
NCBI-ProteinID:
ARJ67451
LinkDB
All DBs
Position
3946866..3951356
Genome browser
AA seq
1496 aa
AA seq
DB search
MNELMKIFGQVSGTQSFDQIRISIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLCDMTLKDLERILYFENYVVVEPGLTPLKIRELLTEEQYMRAVDEYGEDAFTAK
IGAEAIRDMLSVIDLDAEKAQLKVDLKETTSEAKRKKLVKRMKLVEAFLESGSRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPEIIVRNEKRML
QEAVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFVYSKLELYGMATTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGIYYITMERDEMPGQVLKIRSMDELKGAIAN
NSVLFYCPTDPNAKIDTNDLDGLLDRLASRDVTAHRRVNVSSRDALEAGLKGGHLRLFNV
EKPGVTLTFADVGDAEKAIKDGKAILFKVPVFVNMAEIEEALTEKTVTLHTKIRARFDTV
DSEGNPVTQIVDTTPGRMMLSVILPKNKNVPFSLINRLLTKKEIQNVIDVVYRHCGQKET
VIFADRVMGLGYSNAFKAGISFGKDDLVIPPEKETLVGETEEKAKEYEQQYQDGLITQGE
KYNKVVDAWSKCTDDVADAMMKQISSLKPGKPINSIYMMAHSGARGSAAQMKQLAGMRGL
MAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQD
AIICEEDCGTTNGLTVSPVIEGGEVIASLAERILGRSAARDIVNPLNGEVIVPAGAMIQE
TEVELIDAAGIETVVIRSVLTCDSEEGVCGTCYGRDLARGTRVNVGEAVGVIAAQSIGEP
GTQLTMRTFHIGGAAQRGAEQSSIEATFDGTVQVINRNVVVNSSGAHIVMSRNCEVALLD
INNRERARHRVPYGAKLLVDEAQKVTKGTKLAEWDPYTLPIITERAGVAHYVDLTEGLSM
REVVDEATGIASKVVVDWKQQPRGAELRPRVTLRDEKGEELLLANGLEARYFMSVDAILS
VENGTKVNAGDVLARIPRESSKTRDITGGLPRVAELFEARKPKDHAIISDCDGRVEFGKD
YKSKRRILVVPEEGDAIEYLIPKGKHISVQEGDYVRRGDPLMDGNPVPHDILKVLGVEAL
AQYLINEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDPGDTTLLVGEQVDRVEFDIEN
SKAIREQGRPASGTPVLQGITKASLQTHSFISAASFQETTRVLTEAAVSGKVDSLQGLKE
NVIVGRLIPAGTGAVMNRLRAIAAKRDKDMQVDGEGEVPAIPPAAEGSAPEAPPAE
NT seq
4491 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaacttatgaagatcttcggccaggtcagcggcacccagtcgttcgaccagatc
cgcatctccatcgcctcgccggagcgcatccgctcctggtcgtacggtgagatcaagaag
ccggagaccatcaactaccgcaccttcaagcccgagcgcgacggtctgttctgcgcccgc
atcttcgggccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagtat
cgcggcatcatctgcgagaagtgcggcgtcgaagtcaccctggccaaggtccggcgcgag
cgcatgggccatatcgagctggcctctcccgtggcgcacatctggttcctgaagtcgctg
cccagccgtatcggtctgctgtgcgacatgacgctgaaggatctcgagcgcattctctat
ttcgagaactacgtggtggtcgagcccggcctcacgcccttgaagatccgcgagctgctg
accgaagagcagtacatgcgcgccgttgacgagtacggcgaggacgccttcaccgccaag
atcggcgccgaggccatccgcgacatgctctccgtcatcgacctggatgccgagaaggcc
cagctgaaggtggacctcaaggagactacctccgaggccaagcgcaagaagctggtcaag
cgcatgaagctggtcgaggccttcctcgaatccggttcgcgtcccgaatggatgatcctg
gaagtgattccggtgattccgccggagctgcgtcccctggttcccctggacggcggccgt
ttcgccacctcggacctcaacgacctctaccgtcgcgtcatcaaccgcaacaaccgcctg
aagcgcctgatcgagctgcgcgcgcccgagatcatcgtgcgcaacgagaagcgcatgctg
caggaggcggtggacgccctgttcgacaacggccgccgcggccgcgccatcacgggggcc
aacaagcgcccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgt
cagaacctgctgggcaagcgcgtcgattattccggccgttcggtcatcgtggtggggcct
gagctcaagctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaagccc
ttcgtctattccaagctcgaactctacggcatggccaccaccatcaaggccgccaagcgc
atggtggaaaaggagcgtcccgaggtgtgggacatcctggaagaggtcatccgcgagcat
cccgtgatgctgaaccgcgcgccgacgctgcaccgcctgggcatccaggccttcgagccc
gtgctgatcgagggtaaggccatccagctgcacccgctggtctgcaccgccttcaacgcc
gacttcgacggcgaccagatggccgtgcacgttccgctgagcctcgaggcccagctggaa
gcccgcgtgctgatgatgtccaccaacaacatcctgtcgcccgccaacggcaagccgatc
atcgtgccgtcgcaggatatcgtgctgggcatctactacatcaccatggaacgggacgag
atgcccggccaggtgctgaagatccggtccatggacgagctgaagggcgccatcgccaac
aactcggtcctgttctattgcccgaccgatcccaacgccaagatcgacaccaacgacctg
gacggcctgctggaccgtctggccagccgcgacgtcacggcccaccgccgtgtcaacgtg
tcgtcccgggacgcgctggaagccggcctgaagggcggccatctgcgcctgttcaacgtg
gagaagcccggcgtcaccctgacctttgccgacgtgggcgacgccgagaaggccatcaag
gacggcaaggccatcctgttcaaggtgccggtgttcgtgaacatggccgagatcgaggaa
gcgctgaccgaaaagacggtcacgcttcacaccaagatccgcgcccgtttcgataccgtg
gattccgaaggcaacccggtgacccagatcgtggacaccacgccgggccgcatgatgctg
tcggtgatcctgcccaagaacaagaacgtgcccttctccctgatcaaccgcctgttgacc
aagaaggaaatccagaacgtcatcgacgtggtctaccgccattgcggtcagaaagagacg
gtgatcttcgccgaccgcgtcatggggctcggctattccaacgccttcaaggcgggcatc
tcgttcggcaaggacgatctggtcattccgccggagaaggaaaccctggtcggcgagacc
gaagagaaggccaaggaatacgagcagcagtaccaggacggcctgatcacccagggcgag
aagtacaacaaggtggtcgacgcctggtccaagtgcaccgacgacgtcgccgacgccatg
atgaagcagatctcgtcgctgaagcccggcaagcccatcaactccatctacatgatggcg
cattccggcgcccgtggttccgccgcccagatgaagcagctggccggcatgcgcggcctg
atggccaagccctcgggcgagatcatcgagacgcccatcatctcgaacttcaaggaaggc
ctcaccgtgctggagtacttcaactccacccacggcgcccgtaaggggctggccgatacc
gcgctgaagaccgccaactcgggttacctgacccgtcgtctggtggacgtggcccaggac
gcgatcatctgcgaagaggattgcggcaccaccaacggcctgaccgtgtcgccggtgatc
gagggcggcgaggtcatcgcctcgctggccgagcgcatcctcggccgctcggcggcgcgt
gacatcgtcaacccgctgaacggcgaggtcatcgtgccggccggcgccatgatccaggag
accgaggtcgaactgatcgacgccgccgggatcgagaccgtggtgatccgctcggtgctg
acctgcgactcggaagagggcgtgtgcggcacctgctacggccgcgatctggcgcggggc
acccgcgtcaatgtcggcgaggccgtgggcgtcatcgccgcccagtccatcggcgagccc
ggcacccagctgaccatgcgtaccttccacatcggcggcgcggcccagcgcggtgcggag
cagtcgtccatcgaggcgaccttcgacggcaccgtccaggtcatcaaccgcaacgtggtg
gtcaactcgtcgggcgctcatatcgtcatgagccgcaattgcgaagtggccctgctcgac
atcaacaaccgcgagcgtgcccgtcaccgcgtcccctacggcgccaagctgctggtggac
gaggcgcagaaggtcaccaagggcaccaagctggccgagtgggacccctacaccctgccg
atcatcaccgagcgcgcgggtgtggcccactacgtcgacctgaccgaaggcctgtccatg
cgcgaggtggtcgacgaggccaccggcatcgccagcaaggtggtggtcgactggaagcag
cagcccaggggcgccgagctgcgtcctcgcgtcacgctgcgtgacgagaagggcgaggag
ctgttgctggccaacggcctggaagcccgctacttcatgagcgtggacgccatcctgtcg
gtggagaacggcaccaaggtcaacgccggcgacgtgctggcgcgcattccgcgtgaatcg
tccaagacccgcgacatcaccggcggtctgccgcgtgtggcggagctgttcgaagcgcgt
aagcccaaggaccacgccatcatctccgattgcgacggccgcgtggaattcggcaaggac
tacaagtccaagcgccgtatcctggtggtcccggaagagggcgacgccatcgagtacctg
atccccaagggcaagcacatctcggtgcaggaaggcgattacgtccgtcgcggcgacccg
ctgatggacggcaacccggtgccgcacgacatcctgaaggtcctgggcgtggaagccctg
gcccagtatctcatcaacgagattcaggaggtctatcgtctgcagggcgtgaagatcaac
gacaagcacatcgaggtgatcgtccgccagatgctgcagaaggtcgagatcaccgacccc
ggcgacaccacccttctggtgggcgagcaggtggaccgcgtcgagttcgacatcgagaac
tcgaaggccatccgcgagcagggccgtccggcctcgggcactccggtgctgcagggcatc
accaaggcaagcttgcagacccactccttcatctcggcggcctccttccaggagaccacc
cgcgtgctcaccgaagcggccgtgtccggcaaggtggacagcctgcagggcctgaaggag
aacgtcatcgtcggccgtctgatccccgccggtaccggcgcggtgatgaaccgcctgcgc
gccattgccgccaagcgcgacaaggacatgcaggtggacggcgagggcgaggttccggcc
atcccgccggccgccgagggttccgctcccgaggctccgcccgccgagtaa
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