Magnetospira sp. QH-2: MGMAQ_2469
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Entry
MGMAQ_2469 CDS
T03795
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
magq
Magnetospira sp. QH-2
Pathway
magq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
magq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MGMAQ_2469 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
magq03019
]
MGMAQ_2469 (rne)
03009 Ribosome biogenesis [BR:
magq03009
]
MGMAQ_2469 (rne)
Enzymes [BR:
magq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MGMAQ_2469 (rne)
Messenger RNA biogenesis [BR:
magq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MGMAQ_2469 (rne)
Ribosome biogenesis [BR:
magq03009
]
Prokaryotic type
rRNA processing factors
MGMAQ_2469 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CCQ74332
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All DBs
Position
complement(2516568..2518982)
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AA seq
804 aa
AA seq
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MATKRMLIDATHAEETRVVVAMGNRLEDFDVEVASRKQLKGNVYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFSEIHPDYYQIPVADREALIAETPDDESANGEVDEPAETNGGEEGEGEG
ASLEVLGGDDVAEETEARRPYHSYRNYKIQEVIKRRQVLLVQVVKEERGNKGAALTTYLS
LAGRYCVLMPNTTRAGGISRKISSANDRKRLKSVLGDLSIPEGMAVIVRTAGAQRSKAEI
KRDYDYLLRVWDTIRTQTLESAAPCLIHEEGNLIKRSIRDLYDKDIDEVVVEGDDGYRTA
KDFMKMLIPSHAKKVQPYKDIVVPLFHRYQVESQLDAMHGPDVQLKSGGYIVINPTEALV
SIDVNSGRSTKERNIEETAYRTNLEAADEIARQLRLRDLAGLIVIDFIDMEVSRYQTNVE
RRLKEAMRIDRARIQIGRISPFGLMELSRQRLRPSLIETSFESCPHCAGTGVIRSTESTA
LHVLRAIEEEGLRGRAAEIAVHVATSVALYILNYKRDALADIESRYGFSVMLMGDDSLIP
PDHRIERLRARSADDPVIEALPVVVEPVDDEEGTGEDGSKRRKRRRRRRGKRPEEGETMD
AESRDAKSEEGESEGTEGTEGTEGATASTTNEDGDEEAPKKRRRRGRRGGRRRRRPEGEE
NGSENGEEASAASAAPAETGEQAPSTESEGSEQPEQEAYTEQAAPVSEAETTETTEAAEP
EEKPKKPARRRAPRKKKEAVAAEAPVEAAPEPVVEAQPEPKPKPEPEPEPEPEEAPALAG
TEVIDVDAVQSESRRKGWWSRLLD
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaagcgtatgttgatcgatgccacccacgccgaagagactcgggtcgtggtg
gccatggggaaccgactagaagactttgacgtcgaggtcgcatcccgcaaacagctcaag
ggtaacgtctatctcgctaaagtaacccgcgtcgaaccgtccttgcaggcggccttcgtc
gaatatggcggcaatcgtcatggctttctggcctttagtgaaatccaccctgactattac
caaatcccggtcgccgatcgggaagcactgatcgccgaaacccccgacgacgagtccgct
aacggcgaggtcgatgaacccgccgaaaccaacggcggcgaagagggcgagggcgaaggc
gccagcctggaggttttgggcggcgatgatgtggccgaggaaaccgaggcccgacgccca
taccactcctatcgcaactacaaaattcaagaagtcatcaagcggcgccaggtgctgctg
gttcaagtggtcaaggaagaacggggcaacaagggcgccgcgctgaccacctatctgtcc
ttggccggtcgctattgcgtgttgatgcccaacaccacccgggcgggcggcatctcccgc
aagatttccagcgccaatgaccgcaagcggctgaaatcggtgctcggcgacctatcgatc
cccgaaggcatggccgtcatcgtgcgcacggcgggggcgcaacgctccaaggccgagatt
aagcgcgactacgactacttgctgcgggtttgggacaccattcgtactcagacgctggag
agtgcggcaccgtgcctgatccacgaggaaggcaacctgatcaagcgctccatccgcgat
ctatacgacaaggacattgatgaagtggtggtcgagggcgacgatggctatcgcaccgcc
aaggacttcatgaaaatgttgatcccgtcgcatgcgaaaaaggtccaaccttacaaagac
atcgtggtgccgttgttccaccgttatcaggtggaaagtcagttggatgccatgcacggg
cctgacgtacagctcaaatcggggggctatatcgtcatcaatcccaccgaggccttggtg
tccatcgacgtcaactcgggacgctccaccaaagaacgcaacattgaagagaccgcctat
cggaccaatctggaagcagcggacgagatcgcccggcagcttcggttgcgcgatttggct
ggtctgatcgttatcgacttcatcgatatggaggtgtcgcgctatcagaccaatgtggaa
cggcggctcaaggaagcgatgcggattgaccgggcccggatccagattggtcgtatcagt
ccttttggtctgatggagttgtcacgacaacggctgcgtccgagtttgatcgagaccagc
ttcgaatcctgcccccattgcgccgggacgggagtgatccgctcgacagaatccaccgcc
ctgcatgtattgcgggccatagaggaagaaggcctgcgtggccgcgcggccgagattgcc
gtgcatgtggcaacctccgtggcgctgtatatcctcaactataagcgcgatgccctggcc
gatatcgaaagtcgttatggcttctcggttatgttgatgggggatgactcgctgattccg
ccagaccatcgtatcgagcgtctgcgggcgcggagcgccgacgatccggtgatcgaggcg
ctgcccgtggtggtcgagcccgtggatgacgaggaaggcactggcgaggacggcagcaaa
cgtcgcaagcgccgccgtcgccgtcgtggcaagcgccccgaagagggcgagaccatggac
gccgagtcacgcgacgccaagagtgaagaaggcgaatccgaaggcaccgaaggcactgaa
ggcaccgagggcgccacggcatctaccaccaacgaagatggtgacgaagaagcccccaag
aaacgtcgtcgccggggtcgccggggaggccgtcgtcggcgccgtcccgagggcgaggaa
aatggttcggaaaacggtgaagaggcgagtgccgccagcgccgcgcccgctgaaaccggc
gaacaggctccgtccacggaatccgaaggcagcgagcagccagaacaagaggcctacacg
gagcaagcggctcctgtatcggaagccgaaaccaccgagaccactgaagctgccgagcca
gaggagaagcccaagaaacccgctcgtcgacgcgcgccgcgtaagaagaaggaagccgtc
gccgccgaggcaccggtggaagccgccccggagccagtcgtcgaggcacaaccggagccc
aagcccaagcccgagcccgagcccgagccggaaccggaagaggcgccggcactggcgggg
accgaagtcatcgatgtggatgcggttcagtcggagtcccgccgaaaaggctggtggtcg
cgtctgctcgattag
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