Magnetospira sp. QH-2: MGMAQ_2764
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Entry
MGMAQ_2764 CDS
T03795
Symbol
rpoB
Name
(GenBank) RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
magq
Magnetospira sp. QH-2
Pathway
magq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
magq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MGMAQ_2764 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
magq03021
]
MGMAQ_2764 (rpoB)
03400 DNA repair and recombination proteins [BR:
magq03400
]
MGMAQ_2764 (rpoB)
Enzymes [BR:
magq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MGMAQ_2764 (rpoB)
Transcription machinery [BR:
magq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MGMAQ_2764 (rpoB)
DNA repair and recombination proteins [BR:
magq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MGMAQ_2764 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
CCQ74615
LinkDB
All DBs
Position
complement(2802740..2806894)
Genome browser
AA seq
1384 aa
AA seq
DB search
MSNSFTGHNRIRKSFGRIPVVAPMPNLIEVQKTSYECFLQRDTPVAERTESGLQEVLKSV
FPINDFSERGTLEFVSYEFEEPKYDVEECQQRGMTYSAPLKVTLRLVVWDVDEETGARSV
RDIKEQDVYMGDMPLMTANGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFAA
RVIPYRGSWLDFEFDAKDLVYVRIDRRRKLPVTTLLLALMADGPAEGENLGEETRRTGGM
SPEQILNFFYDTVSFTKGAKGWKTAFDAKRLAGTKMAFDLVDANTGDVVAEIGKKMTPRL
ARKLTEAGMTEQLISLEELVGRYIAQDLINEETGELFCEAGDELTEEILEILEKAGITEI
PTLAIDHINVGPYIRNTLAIDKNTTREEALIDIYRVMRPGEPPTLDTAENLFGGLFFDSE
RYDLSPVGRVKMNSRLGFETEDTLRTLRSEDILEVVKVLVELKDGKGEIDDIDHLGNRRV
RSVGELMENQYRVGLLRMERAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQ
FMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIN
SLATYARVNQYGFIESPYRKVVDGKVSDDVMYMSAMQEGKFAIAQANTELAEDGSFVQDL
VSVRQAGDYHMAPSTDIDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLI
KAEAPLVGTGMEQAVARDSGASIVAKRSGIVDQIDGTRIVVRATEETSHSAAGVDIYNLL
KFQRSNQNTCINQRPLVKVGDRVTQGEIIADGPSTELGELALGRNVLVAFMPWNGYNFED
SILISERIVRDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNMDEAGIVYIG
AEVKPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVEVRVF
SRRGVDKDERALAIERAEIDRLAKDRDDERDILERSFRTRLQALIMGKTVSGGPNGVKAG
DTITDELLAGVEAREWGKIVLDDDNIMADVEALRTHTDESVEVLNKRFENKVEKLQRGDE
LPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPFLEDGTHVDVVLNPL
GVPSRMNVGQILETHLGWACNGIGRQIGDMLDAIKLGLADDEPLREKLADVYGQDVYKQS
IEHLDQPQLIDMSKNLRNGITIATPVFDGAREPDIVKMLEKANLPASGQMDLWDGRTGEK
FDRAVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEA
YGAAYTLQEMLTVKSDDVSGRTKVYEAIVRGDDTFEAGIPESFNVLVKELHSLGLNVELL
QSEI
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgagtaattccttcaccggtcacaatcgtattcgcaagagctttgggcgcatccccgtg
gtcgccccgatgccgaacctgatcgaggtccaaaagacttcctatgaatgtttcctgcaa
cgcgacacgccggtcgcagagcgcaccgaaagtggtttgcaggaagttttgaagtcggtt
ttcccgatcaatgacttctccgagcgcggcacgctcgagttcgtatcctatgaattcgaa
gagcccaagtacgacgtggaggaatgccagcaacggggcatgacctactcggcgccgctc
aaggtcaccctgcggttggtggtctgggacgtggacgaggaaaccggggcccgctccgtg
cgtgatatcaaggaacaagacgtctatatgggcgacatgcctttgatgaccgccaacggt
accttcgtggtcaacggcaccgagcgcgtgatcgtctcgcagatgcaccgctctccgggc
gtgttcttcgatcacgacaagggcaagacccattcctcgggcaaatatctgtttgccgcc
cgggtgattccctatcgcggttcctggctcgacttcgagtttgatgccaaggatctggtc
tatgtgcgcatcgaccgccgtcgcaagctgcctgtcaccaccttgctgttggccctgatg
gccgatggtccggcggaaggcgagaacctgggcgaagagacccggcgcaccggcggcatg
agccccgagcagattctcaacttcttctacgacacggtctccttcaccaagggcgccaag
ggttggaagaccgcttttgacgccaagcgtttggccggcaccaagatggcctttgacttg
gtggatgccaacaccggcgacgtggttgccgaaatcggtaaaaagatgaccccgcgtctg
gcgcgcaagctgaccgaagcgggcatgacggaacagctgatttccctggaagaactggtc
ggtcgctacattgcacaagacctgatcaacgaggaaaccggcgaactgttctgcgaagcc
ggtgacgaactgaccgaagagatcctggagatcctggaaaaggccggaatcactgaaatc
ccgaccctggccattgatcatatcaatgtgggtccctacatccgcaataccctggccatc
gacaaaaacaccacccgcgaagaggccctgatcgatatctaccgggtcatgcggccgggc
gaaccgccgaccttggatacggcggagaacctgtttggtgggttgttctttgattccgaa
cgttatgacctgtcaccggtaggccgggtgaagatgaactcgcgcctcggctttgaaacc
gaagacaccctacgcaccctgcgcagcgaggatatcctcgaagtggttaaggtgctggtg
gagcttaaggacggcaagggcgagatcgacgacattgatcacctgggcaaccgtcgtgtg
cggtcggtcggcgaactgatggaaaatcagtatcgggtcggtctgctgcgcatggaacgg
gccatcaaggaacgcatgagttccgtcgatattgatacggtgatgccgcacgacctgatc
aatgccaagcccgctgccgccgcggtgcgcgagttcttcggatcgtcgcagcttagccag
ttcatggatcagaccaacccgctgtcggaaatcacccacaaacggcgcctgtcggctctc
ggcccgggcggtctgacccgcgagcgcgccgggttcgaggtgcgtgatgtgcatccgacg
cattatggtcgcatttgtcccattgagacgcctgaaggccccaacatcggcctgattaac
tcgctggccacttatgcccgggtcaatcaatacggcttcatcgaaagcccctaccggaaa
gtggtggacggcaaggtttccgacgacgtcatgtacatgtcggccatgcaagagggcaaa
ttcgccatcgcccaggccaatacggaactggccgaggacggtagctttgtccaagacctg
gtcagcgtgcgtcaggcgggcgattaccacatggcgccttccaccgatatcgacctgatg
gacgtgtcgccgaagcagcttgtgtccgtggccgcggcgctcattccattcttggaaaac
gacgacgccaaccgcgccctgatgggatcgaacatgcagcgtcaggccgtgccgctgatc
aaggccgaagcgccgttggttggtaccggcatggaacaggccgtggctcgagactccggg
gcgtccatcgtcgccaagcgatccggcatcgtcgatcagatcgacggaacccgtatcgtg
gtgcgtgccacggaagaaacctcgcactcggcggcgggcgtcgacatctacaatctgctg
aagttccagcgttccaaccaaaacacctgcatcaaccagcggccgctggtgaaggtcggt
gaccgggtgacccagggcgagattatcgccgatggtccttctaccgagcttggtgaattg
gctttggggcggaacgtgctggtcgcgttcatgccatggaatggttacaacttcgaggat
tccatcctgatctccgagcgcatcgtccgcgacgacgtgttcacctcgatccatatcgag
gaattcgaggtcatggcccgcgatacgaaactgggccaagaggaaatcacccgcgacatt
cccaatgtgggtgaagaagcgctgaagaatatggacgaggcgggcatcgtgtatatcggt
gccgaagtcaagccgggcgatattctggtcggcaaggtgacgcccaaaggcgaatccccg
atgactccggaagaaaagctgctgcgggccatcttcggcgaaaaggcttccgatgtgcgc
gacacgtcgctgcgtttgccaccgggcgtcgccggtaccatcgtcgaggtgcgggtgttc
tcgcgccggggcgtggacaaggacgaacgcgccctggccatcgagcgggccgaaatcgac
cgcttggccaaggatcgggacgatgaacgggatattctggagcgcagcttcagaacccgc
ttgcaggctctgatcatgggtaaaaccgtgagcggcggtcccaatggcgtcaaggccggg
gacaccattaccgacgagttgctggccggtgtggaggcccgcgaatggggtaaaatcgtc
ctcgacgatgacaacatcatggccgatgtggaagccctgcgcacgcacaccgatgagagc
gtcgaagtactcaacaaacgcttcgagaacaaggtcgagaagctacagcgtggtgacgaa
ctgccgccgggcgtgatgaagatggtcaaggtcttcgttgcggtgaagcgcaagctccag
ccgggcgacaagatggcaggacgtcatggcaacaagggtgtgatctccaagatcaatccc
atcgaggacatgcctttcctggaagacggcacccatgtggacgtggtgctcaaccccttg
ggcgtgccatcgcgcatgaacgtggggcagatcctcgaaacccatctgggctgggcctgt
aacggcatcggacgccagattggtgacatgctagacgccatcaagctcggcttggcggac
gacgaaccgctgcgcgagaagttggccgatgtgtacggtcaggacgtctataagcagagc
atcgaacatctggatcagccgcaactgatcgatatgtccaagaatttgcgcaacggcatc
accatcgccacgccggtgtttgatggtgcccgcgagccggacatcgtcaagatgctggaa
aaagccaacctgcccgcatccggacagatggatctgtgggatggccggaccggcgagaag
tttgatcgggcggtgactgtcggctacatctatatgctgaagctgcatcacttggtggat
gacaagatccacgctcggtctatcggcccgtactcgctggtcacccagcagccgctgggc
ggcaaggcccaattcggcggacagcggttcggcgaaatggaggtctgggctttggaagcc
tatggtgccgcctataccctgcaggaaatgctcacggtcaaatcggatgacgtctccggt
cggaccaaggtctatgaggccatcgtccgaggggacgataccttcgaggcgggcatccct
gagtccttcaacgtgttggtcaaggaattgcactcgctcggcttgaacgtcgagcttctg
caaagcgaaatctga
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integrated database retrieval system
