Magnetospira sp. QH-2: MGMAQ_3163
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Entry
MGMAQ_3163 CDS
T03795
Name
(GenBank) conserved protein of unknown function
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
magq
Magnetospira sp. QH-2
Brite
KEGG Orthology (KO) [BR:
magq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
magq03016
]
MGMAQ_3163
Enzymes [BR:
magq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MGMAQ_3163
Transfer RNA biogenesis [BR:
magq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MGMAQ_3163
Prokaryotic type
tRNA splicing ligases
MGMAQ_3163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
CCQ74999
LinkDB
All DBs
Position
complement(3215539..3216777)
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AA seq
412 aa
AA seq
DB search
MNQFDIIQGEGVPIQAWTRGVPVEEKAEQQLRNVASLPFVHHHVAVMPDVHWGYGATVGS
VIPAKGAIIPAAVGVDIGCGMMAVQTSLTSQRLPDNLQDLRNSIERAVPHGRTGRGHQKS
DRGAWGNPPDRVAQVWSHGSNRKGSLEEGFDRLVEAHPKLRKANHVHHLGTLGTGNHFIE
ICLDEADRVWVMLHSGSRGVGNRIGTYFIELARKDMERYFINLPDRDLAYFPEGTDHFDD
YVQAVSWAQAYALANREVMMDAVLAVMGKMFRRFDVGDVAVNCHHNYVAREQHFGAQVWV
TRKGAVSARKDELGIIPGSMGARSYIVRGRGNKESFCSCSHGAGRLMSRGEARQRFTLAD
HRAATEGVECRKDKEVIDETPQAYKDIDAVMAAQTDLVEVVHTLKQVVCVKG
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagtttgacatcatccagggcgaaggcgtgcccatccaggcctggacgcgcggc
gtcccggtggaggaaaaagccgaacagcagctgcgcaatgtggcgtccctgccgtttgtt
catcatcatgtggcggtcatgcccgatgtgcattggggctatggcgcgaccgtgggatcg
gtcatcccggccaagggagcgatcattcccgccgccgtcggggtggatatcggctgcggc
atgatggcggtgcaaacctcgctgacctcccagcggctgcctgacaatctgcaagacctg
cgcaacagtattgagcgtgcggttccccatgggcgtacggggcgcggtcatcagaaaagc
gaccggggggcctggggcaatccgcccgatcgggtggcccaggtctggtcccatgggtcc
aaccgcaagggtagcctggaagaaggcttcgaccggctcgtcgaggcccatccgaagctg
cgcaaggccaaccatgtgcatcacctgggcaccctgggaacgggcaatcatttcatcgag
atctgcctcgacgaagcggaccgggtctgggtgatgctgcattcgggttcgcgcggtgtg
gggaaccgcatcggaacctactttatcgagctggcccgcaaagatatggaacgatacttc
attaatctgccggatcgggatctggcctacttccccgagggcaccgatcacttcgatgac
tacgtccaggcggtctcctgggcccaggcctatgccctggccaaccgggaggtgatgatg
gatgccgttctggcggtgatgggtaagatgttccgacgctttgacgtgggcgacgtggcg
gtcaactgccaccacaactatgtggcccgcgagcagcatttcggtgcccaggtctgggtg
acccgcaagggcgccgtgagtgcgcgcaaggacgaactggggatcatccccggttccatg
ggcgcccgctcctatatcgtccgtggtcgcgggaacaaggagtccttttgttcttgttca
cacggggccggtcggctcatgtcccggggcgaggcgcgccagcgtttcaccctggccgat
caccgggcagccaccgaaggcgtcgaatgtcgcaaggacaaggaagtcatcgacgagact
ccgcaggcctacaaggatatcgatgcggtgatggcggcccagacggatctggtggaggtg
gtccataccctcaaacaggtagtctgcgtgaagggctaa
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