Magnetospirillum sp. XM-1: XM1_0408
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Entry
XM1_0408 CDS
T04231
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
magx
Magnetospirillum sp. XM-1
Pathway
magx03030
DNA replication
magx03410
Base excision repair
magx03420
Nucleotide excision repair
magx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
magx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XM1_0408 (polA)
03410 Base excision repair
XM1_0408 (polA)
03420 Nucleotide excision repair
XM1_0408 (polA)
03440 Homologous recombination
XM1_0408 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
magx03032
]
XM1_0408 (polA)
03400 DNA repair and recombination proteins [BR:
magx03400
]
XM1_0408 (polA)
Enzymes [BR:
magx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XM1_0408 (polA)
DNA replication proteins [BR:
magx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XM1_0408 (polA)
DNA repair and recombination proteins [BR:
magx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
XM1_0408 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XM1_0408 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
HHH_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
CUW37477
UniProt:
A0A0U5MCN0
LinkDB
All DBs
Position
I:400739..403516
Genome browser
AA seq
925 aa
AA seq
DB search
MAAPRHVTLIDGSGFIFRAFHGLPPMTRADGTPVNAVYGFTTMLMKLLSDSDADHVAVIF
DSSRKTFRSDIYPEYKAHRPPAPEELVPQFPLVREATRAFDLPAVELEGFEADDLIATYA
RLAVEAGARVTIVSSDKDLMQLVGPGVEMYDPMKNRAIGEAEVREKFGVPPDKVVDVQAL
CGDSSDNVPGVPGIGVKTAAQLIEEYGDLDTLLARAGEIKQPKRRETLQQNADLARISRE
LVRLRADAPVPVPLADLDVKPPAPEKLAAFCAAQGFRSLMGRLNAKIPTAPTATRAIVAA
APAEAPSLPPTVETAYELVTDLAALDRWITKATETGLVGFDTETTGLDPLRAKLVGISLA
VAPGRACYIPVMHSPAQAQGDLLGGPSADAPKILPAAQTLARLAPLLADPSVLKVGHNIK
YDMQVMTGLGLAVQAFDDTMLLSYVLDGASHGHGLDELCLLHLGHTNIPFSEVCGTGRNQ
VTFDRVPLDKACAYAAEDADMTLRLHGLLKPRLLAERMVSVYETLERPLVPVISAMERDG
IKVDRAQLMALSEDFGRRLGELETEVVALNNGEAFNLGSPQQLGKVLFETLNLPGGKKTK
TGQWATGADVLEELAPLHPLPARLLDWRMLSKLKGTYTDALVAQINPATGRVHTSYALAA
TTTGRLSSSDPNLQNIPIRTEEGRKIRHAFVAEPGKKLISADYSQIELRLVAHVAEIEGL
RDAFARNQDIHAITASQVFGVPLDGIDPGLRRRAKAINFGIIYGISAFGLAAQLGIPQGE
AKAYIEAYFARYPEIRAYMERTKEEARENGFVTTLFGRKVFTPGIKDKNGAMRAFAERAA
INGPIQGGAADIIKRAMIRLPAALADAGLAARLLLQVHDELVLEAPEAEAEATVQVVKSV
MESAAALSVPLLVEAGVADSWDAAH
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
gtggccgcaccccgccacgtcactctgatcgacggctcgggcttcatcttccgggccttc
cacggcctgccgcccatgacgcgggccgacggcacgccggtgaacgccgtctacggcttc
accaccatgctgatgaagctgctgtccgacagcgacgccgaccacgtggcggtgatcttc
gattcctcgcgcaagaccttccgcagcgacatctaccccgaatacaaggcccaccgcccg
ccggcgcccgaggagctggtgccccagttccccctggtgcgcgaagccacgcgggccttc
gacctgccggccgtcgagctggaaggattcgaggccgacgacctgatcgccacctatgcc
cgtctggccgtcgaggccggggccagggtcaccatcgtctcgtccgacaaggacctgatg
cagctggtggggccgggggtcgagatgtacgaccccatgaagaaccgcgccatcggcgag
gccgaggtcagagaaaagttcggcgtgccgccggataaggtggtggacgtccaggcgctg
tgcggcgattcgtccgacaacgtgccgggcgtgccgggcatcggcgtcaagaccgccgcc
cagctgatcgaggaatacggcgatctcgacaccctgctggcccgcgccggcgagatcaag
cagcccaagcgccgcgagaccctgcaacagaacgccgatctggcccgcatctcgcgcgaa
ttggtccgcctgcgcgccgacgcgccggtgccggtgccgctggccgacctggacgtcaag
ccgccggccccggaaaagctggccgccttctgcgccgcccagggcttccggtccctgatg
ggccgcctcaacgccaagattcccaccgcccccaccgccacgcgggccatcgtcgccgcc
gctccggccgaagccccctccctgccgccgacggtggagaccgcctacgagctggtcacc
gatctggccgccctggatcgctggatcaccaaggccaccgagacaggattggtgggcttc
gacaccgagaccaccggcctcgaccccttgcgcgccaagctggtgggcatctccctggcc
gtggcgccgggccgggcctgctacatcccggtgatgcattccccggcccaggcccagggt
gaccttctgggcgggccatcggccgacgccccgaagatcctgcccgccgcccagaccctg
gcgcggcttgctccgctgctggccgatccttcggtgctgaaggtcggacacaacatcaag
tacgacatgcaggtgatgaccggactgggccttgccgtccaggccttcgacgacaccatg
ctgctgtcctacgtgctggacggggccagccacggccatgggctggacgagctgtgcctg
ctccatctcggccacaccaacattcccttctccgaggtctgcggcacgggccgcaaccag
gtgaccttcgaccgcgtgccgctggacaaggcctgcgcctacgccgccgaggacgcggac
atgacgctgcgcctgcatggcctgctgaaaccccgcctgttggccgaacgcatggtcagc
gtctacgagacgctggaacgcccgctggtgccggtgatcagcgccatggagcgggacggc
atcaaggtggaccgcgcccagctgatggcgctttccgaggatttcggccgccgcctgggc
gagctggagaccgaggtggtggccttgaacaacggcgaggccttcaacctgggttcgccg
cagcaattgggcaaggtgctgttcgaaaccctgaacctccccggcggcaagaagaccaag
accggccagtgggccaccggcgccgacgtgctggaggaactggcgcccttgcatcccctg
cccgcccgcctgctggactggcgcatgctgtccaagctgaagggcacctacaccgacgcc
ctggtggcccagatcaatccggccacgggacgcgtccacacctcctacgcgctggccgcc
accaccaccggacggctgtcgtcttccgaccccaatctgcagaacatccccatccgcacc
gaggaagggcgcaagattcgccacgccttcgtggccgaaccgggcaagaagctgatcagc
gccgactattcgcagatcgagctgcgcctggtcgcccatgtggcggagatcgagggcctg
cgcgacgccttcgcccgtaaccaggacatccacgccatcaccgcgtcccaggtgttcggc
gtgccgctggacggcatcgatccgggcttgcgccgccgggccaaggccatcaatttcggc
atcatctacggcatcagcgcctttggcctggccgcccagctgggcatcccccagggcgag
gccaaggcctatatcgaggcctatttcgcccgctatcccgaaatccgcgcctatatggag
cggaccaaggaggaggcgcgggaaaacggcttcgtcaccaccttgttcggacgcaaggtc
ttcacgccgggcatcaaggacaagaacggcgccatgcgcgccttcgccgagcgcgccgcc
atcaacggcccgatccagggcggcgccgccgacatcatcaagcgcgccatgatccgcctg
cccgccgccctggccgatgccggcctggcggcccgcctgctgctccaggtccatgacgaa
ctggtcctcgaagcccccgaggccgaggccgaggccaccgtccaggtggtgaaaagcgtc
atggaatccgccgccgccctgtccgtccccctgctggtggaagccggcgtcgccgacagc
tgggacgccgcgcactaa
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