Magnetospirillum sp. XM-1: XM1_0878
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Entry
XM1_0878 CDS
T04231
Name
(GenBank) putative DNA polymerase III, delta subunit (holA)
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
magx
Magnetospirillum sp. XM-1
Pathway
magx03030
DNA replication
magx03430
Mismatch repair
magx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
magx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XM1_0878
03430 Mismatch repair
XM1_0878
03440 Homologous recombination
XM1_0878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
magx03032
]
XM1_0878
03400 DNA repair and recombination proteins [BR:
magx03400
]
XM1_0878
Enzymes [BR:
magx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XM1_0878
DNA replication proteins [BR:
magx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
XM1_0878
DNA repair and recombination proteins [BR:
magx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
XM1_0878
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta_C
HP_1247_M
HP_1247_C
Motif
Other DBs
NCBI-ProteinID:
CUW37947
LinkDB
All DBs
Position
I:824161..825183
Genome browser
AA seq
340 aa
AA seq
DB search
MKLAGSRAEAFLKAPDPAMRAVLVFGPDLGLVRERVQRLIRSVVPDVSDPFRVAELSPAA
LKEVPSRLADEAAAMALGGGRRAVVLRDAGDAQTGAVSSFLARPMGDALVVIEGGELGPR
SSLRKLFEGADNAAALACYGDEGGSLAGVIQEELKAAGLMAEPDAMAYLTEHLGGDRRLT
RAELGKLALYMGGPGRVGLEDAIACVGDTAALGLDDLALATADGDHAGAQRVLDRLLREG
NQPVGMLRSVARHFQRLHLAAGLMNQGKSTDQAMAALKPPVIFKAADRFKRQLSRWPADR
LGKALDLLTEAEVDCKTTGMPAAEITSRALMMIARAAARR
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcgcgggatcgcgggccgaggcgttcctcaaggcgccggatcctgccatgcgc
gccgtgctggtcttcggtcccgaccttggcctggtgcgtgagagggtgcagcggctgatc
cgttcggtggttcccgacgtttccgatcccttccgggtggccgaactcagccccgccgcg
ctcaaggaggttccctcccgtctggccgacgaggccgcggccatggcgctgggcggcgga
cggcgtgccgtggtgctgcgtgacgccggcgacgcccagacgggggcggtgtcctccttc
ctggcgcggcccatgggcgacgccctggtggtgatcgaaggcggcgagctggggccgcgc
tcctcgcttcgcaagctgttcgaaggcgccgacaatgccgccgccctggcctgctacggc
gatgagggcggttcactggccggggtgatccaggaggaattgaaggcagccgggctgatg
gccgaacccgacgccatggcgtatctcaccgagcatctgggcggcgaccgccgcctgacc
cgggccgagctgggcaagctggcgctgtatatgggcggacccggccgggtgggcctggag
gacgccatcgcctgcgttggcgataccgccgcgctcggcctcgacgacctggcgctggcc
accgccgacggcgaccacgccggggcgcagcgggtgctcgaccgcctgctgcgcgagggc
aaccagccagtgggcatgctgcgctcggtggcgcggcacttccagcggctgcacctggcc
gccggactgatgaaccagggcaagtccaccgaccaggccatggcggccttgaagccgccg
gtgatcttcaaggccgccgaccgcttcaagcgccagctgtcgcgctggcccgccgaccgt
ctgggcaaggcactcgacctgctgaccgaggccgaggtggattgcaagaccaccggcatg
ccggccgccgagatcacctcgcgcgccctgatgatgattgcccgagcggcggcgaggcga
tga
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