Magnetospirillum sp. XM-1: XM1_1417
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Entry
XM1_1417 CDS
T04231
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor(RNA polymerase sigma factor 54,11-496)
KO
K03092
RNA polymerase sigma-54 factor
Organism
magx
Magnetospirillum sp. XM-1
Pathway
magx02020
Two-component system
magx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
magx00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
XM1_1417 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
XM1_1417 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
magx03021
]
XM1_1417 (rpoN)
Transcription machinery [BR:
magx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
XM1_1417 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_23
SgrR_N
Arg_repressor
YdaS_toxin
HTH_11
Motif
Other DBs
NCBI-ProteinID:
CUW38486
LinkDB
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Position
I:complement(1383942..1385453)
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AA seq
503 aa
AA seq
DB search
MAIGPRLDIRQTQSLVMTPQLQQAIKLLQLSNFELAAFIDQELERNPLLEREEGERGLEP
AEPKADAADLPVLDSAPAEPPLLDGMTAGSAEDGMDVDYDNTFNNDSASDAVQDESLGQW
GNVNGGGGGFDDGESSLEQMTAGEISLRDHLAAQVSMDIPVPADRLIALHLIEMLDEAGY
LIGDLDELAEKLGCSRQHVEVVLKRVQGFDPVGVFARSLKECLGLQLAEKNRLDPAMQAL
LDNLELLARRDLPGLMRVCGVDAEDLAEMISEIKALDPKPALAFDHVVAQPVTPDVLMRR
TQDGAWVVELNSDTLPRVLVNTRYYSKIAGAAKSKDDKTYISERFQSANWLVKSLHQRAT
TILKVATEIVRQQDAFFRLGVQHLRPLVLRDIATAISMHESTVSRVTSNKYIATPRGIYE
LKYFFTQAISSADGGDAHSAEAVRHRIKALIDAEGKSVLSDDSIVDALKAEGIDIARRTV
AKYREAMNIGSSVQRRREKSLGM
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggccatcggtcccaggcttgatatccgccagacccagtctctggtgatgacgccgcaa
ttgcagcaggcgatcaagctgctgcaattgtccaatttcgagctggccgccttcatcgat
caggaactggagcgcaacccgcttctggagcgggaagaaggcgagcggggactcgagccc
gccgagcccaaggccgacgccgccgacctgcccgtcctcgattccgcccccgccgaaccc
ccgttgctggacggcatgaccgccggctcggccgaggacggcatggacgtggactacgac
aacaccttcaacaacgacagcgcgtccgacgccgtccaggacgaatcgctcggccagtgg
ggcaacgtcaacggcggcggcggcggcttcgacgacggcgaatccagcctggaacagatg
acggccggcgagatcagcttacgcgaccatctggccgcccaggtcagcatggacattccc
gtccccgccgaccgcctgatcgcgctgcatctcatcgagatgctggacgaggcgggctac
ctgatcggcgacctggacgaactggcggaaaagctgggctgttcgcgccagcatgtggaa
gtggtgctgaaacgcgtccagggcttcgatcccgtcggcgtcttcgcccgctccctcaag
gaatgcctgggtctgcagctggctgagaagaaccgcctggaccccgccatgcaggcgctg
ctggacaatctggagctgctggcccggcgcgacctgcccggcctgatgcgggtctgcggc
gtcgacgccgaggacctggccgagatgatctccgagatcaaggcgctggaccccaagccg
gcgctggccttcgaccacgtggtggcccagccggtcacccccgacgtgctgatgcgccgc
acccaggacggcgcctgggtggtggagctgaattccgacaccctgccccgcgtgctggtc
aacacccgctactattccaagatcgccggcgcggccaagagcaaggacgacaagacctac
atctccgagcgcttccagtcggccaactggctggtgaagtcgctgcaccagcgcgccacc
accatcctcaaggtggccaccgagatcgtccgccagcaggacgccttcttccgcttaggg
gtccagcacctgcggcccttggtgctgcgcgacatcgcgaccgccatctccatgcacgaa
agcacggtcagccgcgtcacctcgaacaagtacatcgccacgcccaggggcatctacgag
ctgaagtacttcttcacccaggccatcagctcggccgacggcggcgacgcccattcggcc
gaggcggtgcgccaccgcatcaaggcgctgatcgatgccgagggcaagagcgtgctgtcc
gacgattccatcgtcgacgcgctcaaggccgaaggcatcgacatcgcccgccggacggtg
gcaaaatacagggaagccatgaacatcggctcgtcggtccagcgccggcgcgagaagtcg
ctgggcatgtga
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