Magnetospirillum sp. XM-1: XM1_2049
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Entry
XM1_2049 CDS
T04231
Name
(GenBank) Superfamily I DNA/RNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
magx
Magnetospirillum sp. XM-1
Pathway
magx03420
Nucleotide excision repair
magx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
magx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XM1_2049
03430 Mismatch repair
XM1_2049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
magx03400
]
XM1_2049
Enzymes [BR:
magx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XM1_2049
DNA repair and recombination proteins [BR:
magx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XM1_2049
MMR (mismatch excision repair)
Other MMR factors
XM1_2049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_11
AAA_22
Viral_helicase1
AAA_12
DO-GTPase2
Motif
Other DBs
NCBI-ProteinID:
CUW39118
UniProt:
A0A0U5MBZ3
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All DBs
Position
I:2053883..2055796
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AA seq
637 aa
AA seq
DB search
MSDPAPSAAELPLDPEQRLAAEAEARSVLVLAGPGTGKTTTLVGRYLHLLERGAQPARIF
VSTFTARAAGELRERIGARLEATGRGIEPEFFRRMPIATLHGMALRLLQRHPPPGCPPFK
VFDEQACARVIARHRLYLGDDVRKPGDVFGAYKDRLMDPAAALAEAKARNDSALLEAAEA
YGRYQKALAEEGGFDFGDLIMELVRGLEADEAYRARLAGFFDHLLIDEYQDINPAQERML
RLLRDQGARLWAVGDDDQCLYAWRSADPAFILGFEAAWPDPALYRLSCNYRSTATIVAAS
GALIGANRKRHAKDQVPRSASRLAMTIAGLDDDEAEAEYVLSVVRGLAGRGMPWREMAVL
YRAGHVGSRIQIRLAEAGVPLVVRGAGEFWQLGPVRLVAGLARLLADPKDMDARAMLGHG
KRVDRLLQQAPEKIDADVPWPALCRQVGRLVSATARPPGEEGLQWRDLAFTAADLAAECD
GAAAFVARMEEQRRSLRRAETEGDAVVLSTIHGAKGLEWSAVVVAGCEADLMPHDSSPDL
EEERRLMYVAATRAKRWLVLSFAALRRAAARPSPYIAEMIGGLDEDQVRYHDARSRALLH
AAPLPETRAPKPLRLRPELKAAAPMRKGRSPSRRTRA
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaccctgccccgtcggcggccgaacttccccttgatcccgaacagcgtctggcc
gccgaggccgaggcgcgatccgtgctggtcctggccgggccggggacgggcaagaccacc
accctggtggggcgctacctccatcttctcgagcggggggcgcagcccgcgcgcattttc
gtatccaccttcacggcgcgggccgcaggcgaactgcgcgagcgcatcggcgcccgcctg
gaggcgacggggcgggggatcgagcccgaattctttcgccgcatgcccatcgccaccctg
cacggcatggccttgcggctgctgcagcgtcacccgccgcccggctgtccgcccttcaag
gtgttcgacgagcaggcctgcgcccgggtgatcgcccggcaccgcctctatctcggcgac
gacgtgcgcaagcccggcgacgtgttcggcgcctacaaggacaggctgatggacccggcg
gcggcgctggccgaggccaaggccaggaatgattccgccctgctggaggcggccgaggcc
tatggccgctaccagaaggcgctggccgaggaagggggcttcgatttcggcgacctgatc
atggaactggtgcgcgggctggaggccgacgaggcctatcgggcgcgcctcgccggcttc
ttcgatcacctgctgatcgacgagtaccaggacatcaacccggcccaggagcgcatgctg
cgcctgttgcgcgaccagggcgcgcggctgtgggcggtgggcgacgacgaccagtgcctc
tacgcctggcgctcggccgatcccgccttcatcttaggcttcgaggcggcatggcccgat
cccgcgctgtatcgcctgtcgtgcaactaccgcagcaccgccaccatcgtcgccgcgtcc
ggcgccctgatcggcgccaaccgcaagcgtcacgccaaggatcaggttccccgcagcgcc
tcgcgtctggcgatgaccatcgccgggctggacgacgacgaggccgaggccgaatacgtg
ctcagcgtggtgcggggactggccgggcgcggcatgccctggcgcgagatggcggtgctc
taccgcgccggccatgtgggctcgcgcatccagatccggctggccgaggcgggggtgccc
ctggtggtgcgcggcgcgggcgagttctggcaattggggccggtgcgccttgtcgccggg
ctggcccgtctgctcgccgaccccaaggacatggacgcccgggccatgctgggccatggc
aagcgcgtcgatcgcctgctgcaacaggcccccgagaagatcgacgccgacgtgccctgg
ccggcgctgtgccgtcaggtggggcgtctggtctcggcgacggcgcgtccgccgggggaa
gaagggctgcaatggcgcgatctggccttcaccgccgccgacctggcggccgaatgcgac
ggcgccgccgccttcgtcgcgaggatggaggagcagcggcgctcgctgcgccgggccgag
accgaaggcgacgcggtggtgctgtccaccattcacggcgccaaggggctggaatggtcg
gcggtggtggtggccggctgcgaggcagacctgatgccccacgattcctcgcccgatctc
gaggaggagcgccgcctgatgtacgtggccgccaccagggccaagcgctggctggtgctg
tcgtttgccgccctgcggcgggccgccgcccgcccatcgccctacatcgccgagatgatc
ggcgggctggacgaggatcaggtgcgctatcacgacgcccggagccgggcgcttctgcac
gccgccccgctccccgagacaagggcgcccaagccgctccggctccgtcccgaactgaag
gccgcggccccgatgcgcaaggggcggtccccgtcccgcaggacgcgcgcatag
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