Magnetospirillum sp. XM-1: XM1_2057
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Entry
XM1_2057 CDS
T04231
Symbol
rhlE
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
magx
Magnetospirillum sp. XM-1
Pathway
magx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
magx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XM1_2057 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
magx03019
]
XM1_2057 (rhlE)
Enzymes [BR:
magx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XM1_2057 (rhlE)
Messenger RNA biogenesis [BR:
magx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XM1_2057 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Utp25_C
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
CUW39126
LinkDB
All DBs
Position
I:2065365..2066816
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AA seq
483 aa
AA seq
DB search
MTVLFSELGLAEPLLKALEAEGYTTPTPIQEQSIPHLIEGRDVLGLAQTGTGKTASFALP
LLQRLDAFKKRAMPKSCRVLVLTPTRELAVQVGQSFRTYGCHYRLRHALVFGGVGMVPQI
KTMAGGVDVLVATPGRLLDLIDQGAIRLDSVEALVLDEADRMLDMGFIQPIRKIVAMVPK
QRQTVLFSATMPDSIVGLANSVLHTPVRVEVTPVSSTAEKIEQKVLFVDREHKRTLLTDI
LAGGDVVRALVFTRTKHGANRVAELLEKAGINADAIHGNKSQGARQKALADFRDGRIKAL
VATDIAARGIDVDGITHVINFELPNEPESYVHRIGRTARAGASGIALSLCDNDEVAYLRD
IEKTIRQAIPVDYEQPYHAPHIATRGLPGGPRATKPPQSHRGGGGAGRGGHPQQSRGGNP
HGEHGSHPAKGRDGAKHTHAGKPSSAKPSSGRPGGKPAGKPGGARPQGGFKGMPGGSRNA
ARG
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgaccgttctgttttccgaactcggcctggccgagcccctgctcaaggcgctcgaggcc
gagggctacaccacccccacccccatccaggaacaaagcatcccccacctgatcgagggg
cgcgacgtcctgggcctggcccagaccggcaccggcaagacggcgagcttcgccctgccg
ctgctccagcgcctggatgccttcaagaagcgcgccatgcccaagagctgccgcgtcctg
gtgctgacccccacccgcgaactggcggtgcaggtcggccagagcttccgcacctatggc
tgccattaccggctgcgccacgcgctggtgttcggcggcgtcggcatggtgccgcagatc
aagaccatggccggcggcgtcgacgtgctggtggctactcccggccgcctgctcgacctg
atcgaccagggcgccatccgcctggattcggtcgaggcgctggtcctcgacgaggccgac
cgcatgctcgacatgggcttcatccagcccatccgcaagatcgtcgccatggtgccgaag
cagcgccagaccgtgctgttctcggccaccatgcccgattccatcgtcggcctggccaat
tccgtgctgcacacccccgtgcgcgtcgaggtgaccccggtttcctccaccgccgagaag
atcgagcagaaggtgctgttcgtcgaccgcgagcacaagcgcaccctgctgaccgacatc
ctggccggcggcgacgtggtccgcgccctggtcttcacccgcaccaagcacggcgccaac
cgcgtcgccgaactgctggagaaggccggcatcaacgccgacgccatccacggcaacaag
tcccagggcgcccgccagaaggccctggccgatttccgtgacggccgcatcaaggcgctg
gtcgccaccgacatcgcggcgcgcggtatcgacgtggacggcatcacccacgtcatcaat
ttcgagctgcccaacgagccggaaagctatgtccaccgcatcggccgcaccgcgcgcgcc
ggcgcttccggaatcgcgctgtcgctttgcgacaacgacgaagtggcctatctgcgcgat
atcgagaagaccatccgccaggccatcccggtggattacgagcagccctaccacgcgccc
cacatcgccacccgcggcctgcccggcggtccccgcgccaccaagccgccgcagtcgcac
cgtggcggcggcggcgccggcaggggcggccatccgcagcagagccgcggcggcaatccc
cacggcgagcacggctcccatccggccaagggccgcgacggcgccaagcacacccatgcg
ggcaagccgtcttcggccaagccctcctcgggccgtccgggtggcaagcccgccggcaag
ccgggtggagcccgtccccagggcggcttcaagggcatgcccggcggcagccgcaacgcc
gccaggggctga
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