Magnetospirillum sp. XM-1: XM1_2117
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Entry
XM1_2117 CDS
T04231
Symbol
rpoA
Name
(GenBank) RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
magx
Magnetospirillum sp. XM-1
Pathway
magx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
magx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XM1_2117 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
magx03021
]
XM1_2117 (rpoA)
03400 DNA repair and recombination proteins [BR:
magx03400
]
XM1_2117 (rpoA)
Enzymes [BR:
magx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XM1_2117 (rpoA)
Transcription machinery [BR:
magx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XM1_2117 (rpoA)
DNA repair and recombination proteins [BR:
magx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XM1_2117 (rpoA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
IDH
Motif
Other DBs
NCBI-ProteinID:
CUW39186
UniProt:
A0A0U5FS17
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All DBs
Position
I:2119240..2120256
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AA seq
338 aa
AA seq
DB search
MIQKNWQELIKPNKLHVEPGADAQRTATVVAEPLERGFGMTLGNSLRRVLLSSLQGAAVT
AIQIDGVLHEFSSIPGVREDVTDIILNIKTLGLRMHGEGPKRMHLRAVGPGEVTAGLIEV
GHDIEIMDPELVLCTLDEGAKLNIEFTVETGKGYVPASQNRPEDSPIGLIPIDAIFSPVR
KVAYKVENTRVGQVTDYDKLSMTVETNGAVTPDDAVALAARILQDQLQLFINFEEPTAVV
EEEKKDELPFNKNLLRKVDELELSVRSANCLKNDNIIYIGDLVQKTEAEMLRTPNFGRKS
LNEIKEVLAQMGLHLGMEIANWPPENIEELAKKLEEPY
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
gtgattcagaagaactggcaggaactgattaagcccaacaagctccatgtggagcccggg
gccgatgcccagcgtaccgcgaccgtggtcgccgaaccgctggagcgcggcttcggcatg
acgctgggcaattccctgcgccgcgtgctgctgtcgtcgctgcagggtgccgccgtcacg
gccatccagatcgacggcgttctgcacgaattctcgtccatccccggcgtgcgggaagat
gtcaccgacatcatcctgaacatcaagactctcggcctgcggatgcatggcgagggcccg
aagcgcatgcatctgcgtgcggtcggcccgggcgaagtcaccgccggcctgatcgaggtc
ggtcacgacatcgagatcatggaccccgaactggtgctgtgcaccctggacgagggcgcc
aagctgaacatcgagttcacggtcgagaccggcaagggctacgtccccgcctcgcagaac
cgtcccgaggattcgccgatcggcctcattccgatcgacgccatcttctcgccggtgcgc
aaggtggcctacaaggtggaaaacacccgcgtgggccaggtcaccgactacgacaagctg
tccatgaccgtcgagaccaacggcgcggtcactccggatgacgccgtggcgctcgccgcc
cgcatcctgcaggaccagctgcagctgttcatcaacttcgaggagcccaccgcggtcgtc
gaggaagagaagaaggacgaactgcccttcaacaagaacctgctgcgcaaggtggacgag
ctggagctttcggtccgttcggccaactgcctgaagaacgacaacatcatctacatcggc
gacctggtccagaagaccgaggccgagatgctgcgcactcccaatttcggccgcaagtcg
ctgaacgagatcaaggaagtgctggcgcagatgggtctgcacctgggcatggaaatcgcc
aattggccgccggagaacatcgaagagctggccaagaagctcgaagagccctattga
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