Magnetospirillum sp. XM-1: XM1_3378
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Entry
XM1_3378 CDS
T04231
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
magx
Magnetospirillum sp. XM-1
Pathway
magx03030
DNA replication
magx03430
Mismatch repair
magx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
magx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XM1_3378 (dnaE)
03430 Mismatch repair
XM1_3378 (dnaE)
03440 Homologous recombination
XM1_3378 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
magx03032
]
XM1_3378 (dnaE)
03400 DNA repair and recombination proteins [BR:
magx03400
]
XM1_3378 (dnaE)
Enzymes [BR:
magx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XM1_3378 (dnaE)
DNA replication proteins [BR:
magx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
XM1_3378 (dnaE)
DNA repair and recombination proteins [BR:
magx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
XM1_3378 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
T2SSK
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
CUW40439
UniProt:
A0A0U5I410
LinkDB
All DBs
Position
I:complement(3363499..3366963)
Genome browser
AA seq
1154 aa
AA seq
DB search
MPAHADFVHLRVHTAYSLAEGAIKLKQLIKLCEKMAMPAIGIADTGNLFGALEFSTSCSD
AGIQPVVGAQIAIRREDGGPSKDGRKPEPDTLVLLCQNEPGYLNLLKLVSKAFLETESGE
TPQVTLHDLETRSEGLIVLTGGPAGPVGRLLADGQAEKAEIVLVRLARAFAGRCYVELQR
HGLEVEDRIEPALVAMAYKHDLPLVATNEPFFADRGMYEAHDALICIAEGAYISQDERRR
LTPEHYFKSPEEMRELFADLPEACDNTLVIAKRCAFGVSKRKPILPPYRMDGLTEAEVLR
KVTLEGLDLRLDKHVFQPGMTDDEKEHAAKPYRERVEFELNVIEQMGFPGYFLIVSDFIQ
WSKAHDIPVGPGRGSGAGSAVAWALTITDLDPLRWGLLFERFLNPERVSMPDFDIDFCQD
RREETIRYVQGKYGYAQVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRICKLVPNNPAN
PMTLEQALESEPLLKEQKDRDETVSHLIDLAMKLEGLYRHASTHAAGVVIGDRSLDELVP
LYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVMVTAVKHVKKTKGIDIDLSAIPL
DDAKSYELLSRGDAAGVFQLESSGMRDVLRKMGPNRLEDLIAVVALYRPGPMDQIPRYIA
CKHGKEEPDYMHPLLEPILKETFGIMVYQEQVMQIAQVLSGYSLGGADLLRRAMGKKIKE
EMEAQRKTFVEGATARGVDGAQASMIFDKVAKFAEYGFNKSHAAAYALIAYQTAWLKANH
PAEFMAATMTYEMSNTDKLNSFRQELDRLGIKLLPPDINASQPTFSVEVLPDGGSAVRYA
LAALKNVGEAAMQSLVDERERDGRFKDIGDFAARMDSKVLNRRQLENMVKAGVFDSLDKN
RGRLFKNADTLCRYAAQAAEDRHSSQMSLLGGSNAPTLKLENGPDWSPHEKLNQEFEAVG
FYLSAHPLDAYSKSMKRLNVLKIAELPRHLQAGGKGRVRLAGSLLSKQERVSAKGSRYAF
LQFSDASGMFEVTCFSEILATSRDLLDAGGPLLIDVDAKLEEDQLRMTCQRIASLDQEAA
KAAAGIRVIISDDSALKQLSELINGEARGRNRVAIVARAGNREVELGLKSTITLSPKFMG
TLRSIAGITEVEEI
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgccagcccatgccgacttcgtccatctgcgcgtccacaccgcctattccctggcggaa
ggggccatcaagctcaagcagctgatcaagctgtgcgagaagatggccatgcccgccatc
ggcatcgccgataccggcaacctgttcggcgccctggaattctcgacctcgtgctcggat
gcgggcatccagcccgtggtcggcgcccagatcgccatccgtcgcgaggatggtggcccg
tccaaggatggacgcaagcccgagcccgacaccctggtgctgctgtgccagaacgaaccc
ggctacctcaacctcttgaaactggtgtccaaggccttcctggagaccgaatcgggcgag
acgccccaggttaccctgcacgatctcgagacccgctccgaggggctgatcgtgctgacc
ggcggtcccgccgggccggtgggccgcctgctggccgacggccaggcggaaaaggccgag
atcgtgctggtccggctggcccgcgccttcgccgggcgctgttacgtggaactgcagcgc
cacggcctggaggtggaggaccgcatcgagccggccctggtggccatggcctacaagcac
gatttgcccctggtcgccaccaacgagccgttcttcgccgaccggggcatgtacgaggcc
cacgacgccctgatctgcatcgccgagggcgcctacatctcccaggatgagcgccgcagg
ctgacgcccgagcattacttcaaatcgccggaagagatgcgcgaattgttcgccgacctg
cccgaggcatgcgacaacaccctggtgatcgccaagcgctgtgccttcggcgtttccaag
cgcaagccgatcctgcctccctaccgcatggacggcctgaccgaggccgaggtgctgcgc
aaggtcaccctggaaggcctcgatctgcggctggacaagcacgtcttccagcccggcatg
accgacgacgagaaggagcacgccgccaagccctatcgcgagcgcgtcgaattcgagctg
aacgtcatcgagcagatgggctttcccggctacttcctgatcgtgtccgacttcatccag
tggtccaaggcccacgacattcccgttgggccgggccgcggatcgggcgccggctcggcg
gtggcctgggcgctgaccatcaccgacctggacccgctgcgctgggggctgctgttcgag
cgcttcctcaatcccgaacgggtctccatgccggacttcgacatcgatttctgccaggac
cgccgcgaagagaccatccgctacgtccagggcaagtacggctacgcccaggtggcgcag
atcatcaccttcggaaagctgcaggcccgcgcggtgctgcgcgacgtgggccgcgtgctg
cagatgccctacggccaggtggaccgcatctgcaagctggtgcccaacaatcccgccaat
cccatgacgctggaacaggcgctggagagcgagccgctgctgaaggagcagaaggacagg
gacgagaccgtctcccacctgatcgatctggccatgaagctggaggggctttaccgccac
gcctcgacccatgccgccggcgtggtgatcggcgaccgctctctcgacgagctggtgccg
ctctatcgagacccgcgctccgacatgccggtcacccagttcaacatgaaatgggtggaa
tcggccggtctggtgaagttcgacttcctgggcctcaagaccctgaccgtgatggtcacg
gcggtgaagcacgtcaagaagaccaagggaatcgatatcgacctgtcggccatcccattg
gacgacgccaaatcctacgaattgctgtcgcggggcgatgcggccggcgtgttccagctg
gaaagttcgggcatgcgcgacgtgctgcgcaagatgggccccaaccgcctggaagacctg
atcgccgtggtggcgctgtaccgtcccggtcccatggaccagattccgcgctacatcgcc
tgtaagcacggcaaggaagagccggactacatgcatccgctcctcgagcccatcctgaag
gagaccttcgggatcatggtctaccaggagcaggtgatgcagatcgcccaggtgctgtcg
ggctattcgctcggcggcgcggatctgctgcgccgtgccatgggcaagaagatcaaggag
gagatggaggcccagcgcaagaccttcgtcgaaggcgccaccgccaggggcgtcgacggg
gcccaggcctccatgatcttcgacaaggtggccaagttcgccgaatacggcttcaacaag
agccacgcggcggcctacgccctgatcgcctaccagacggcctggctcaaggccaaccac
ccggccgagttcatggcggcgaccatgacctacgaaatgagcaacaccgacaagctcaat
tcgttcaggcaggagctggaccgtctcggcatcaagctgcttccccccgacatcaacgcc
tcgcagcccaccttctcggtggaagtgctgcccgacggcggctcggcggtgcgctacgcc
ctggcggccttgaagaacgtgggcgaggcggccatgcagtccctggtggacgagcgtgag
agggacggccgcttcaaggatatcggcgacttcgcggcgcgcatggattccaaggtgctc
aaccgccgccagctggagaacatggtcaaggccggcgtcttcgattcgctcgacaagaat
cgcgggcggctgttcaagaacgccgacacgctgtgccgctacgcggcccaggccgccgag
gaccgccactccagccagatgagcctgctgggcggctccaacgcgccgaccttgaagctg
gagaacggccccgactggtcgccgcacgagaagctcaaccaggaattcgaggcggtgggc
ttctatctgtccgcccatccgctggacgcctattccaagagcatgaagcgcctcaacgtg
ctgaagatcgccgagctgccccgccacctccaggcgggcggcaagggcagggtgcgcctg
gccggctcgcttctgtccaagcaggagcgcgtctcggccaagggctcgcgctacgccttt
ttgcagttctccgacgcgtccggcatgttcgaggtcacgtgcttttcggaaatcctcgcc
acctcgcgggacttgctcgacgccggcgggccgttgctcatcgacgtggacgccaagctg
gaggaggatcaactgcgcatgacctgccagcgcatcgcctcgttggatcaagaggccgcc
aaggccgccgccggcatccgcgtcatcatctctgacgacagcgccctgaagcagctttcc
gagctgatcaacggcgaggcgcggggccgcaaccgtgtcgccatcgtggcccgggccggc
aaccgcgaggtggaactgggccttaaatccaccatcacgctttcgcccaaattcatgggc
acgctgcgcagcattgccggcatcaccgaggtggaggagatttga
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