Magnetospirillum sp. XM-1: XM1_4643
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Entry
XM1_4643 CDS
T04231
Symbol
uvrD
Name
(GenBank) DNA-dependent ATPase I and helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
magx
Magnetospirillum sp. XM-1
Pathway
magx03420
Nucleotide excision repair
magx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
magx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XM1_4643 (uvrD)
03430 Mismatch repair
XM1_4643 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
magx03400
]
XM1_4643 (uvrD)
Enzymes [BR:
magx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XM1_4643 (uvrD)
DNA repair and recombination proteins [BR:
magx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XM1_4643 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
XM1_4643 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
DinB_2
Motif
Other DBs
NCBI-ProteinID:
CUW41692
UniProt:
A0A0U5MQV4
LinkDB
All DBs
Position
I:complement(4674456..4676738)
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AA seq
760 aa
AA seq
DB search
MSDPFALDDEAPSALSFPRASGPRPVPLDAPWLKGLNPEQFQAVTTTDGPVLVLSGAGTG
KTKVLTSRLAHILASGLAQPWQCLAVTFTNRAAREMKERVGQLVGPVADGIWLGTFHSLC
LRILRSHAEAVGLSGDFTVLDADDQMRVLKQVMADAHVDAKATPPQGLMATIQRWKDRAV
TPDKAAADGGAEGQAKALYRAYQERLKALNACDFGDLLLHVLTVFLSDAEALARWQGRFR
YLLVDEYQDTNVAQYLWLRLLAQTHRNICCVGDDDQSIYSWRGAEVGNILRFEKDFPGAK
VVRLESNYRSTPHILAAASALIANNAGRLGKTLRPGLAHDDSAIEKIRTMAVWDGEAEAR
LVVEEIEALQRKGEKLSSMAILVRAGFQTREFEERLITTGIPYRVIGGPRFYERLEIRDA
MAYLRLVVSASDGLAFERIVNTPKRGLGEAAIQTIHLAARAEQVPLLEAARRLTGTDELK
PKPRQALAKFVEDVDRWRSLLDSMPHAELAATILDESGYVDMWKADKSADAPGRVENLKE
LVAALEEYDSLPSFLEHVALVMENDSKAEADSVVIMTLHGAKGLEFDSVFLPGWEEEVFP
HIRALSESGTSGLEEERRLAYVGLTRARKRVLVTFAANRRIYNQWKSQLPSRFVEELPES
HVERSGERGLYGGGLAESKAAWNDPAWSRARFGQPRAAAAPTAWSQPKARQSEGGFKPGQ
RVFHDKFGNGTVLSLDGNKLEIAFDKAGTKKVLDSFVSAI
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcccttcgcccttgacgacgaggcgccctccgcgctgtctttcccccgtgca
tccggtccccggccggtgccgctggacgccccttggctgaaggggctgaaccccgagcag
ttccaggcggtgaccaccaccgacgggccggtgctggtgctgtcgggggccggcaccggc
aagaccaaggtgctgacgtcgcgtctggcccacatcctggcgtcgggcctggcccagccc
tggcaatgcctggcggtgaccttcaccaaccgcgcggcgcgcgagatgaaggagcgcgtc
ggccagctggtcggcccggtggccgacggcatctggctgggcaccttccattcgctgtgc
ctgcgcatcctgcgctcccatgccgaggcggtcgggctttccggcgatttcaccgtgctg
gacgccgacgaccagatgcgggtcttaaagcaggtgatggccgacgcccatgtggatgcc
aaggccacgccaccccagggactgatggccaccatccagcgctggaaggaccgcgcggtc
acccccgacaaggcggcggccgacgggggcgccgagggccaggccaaggcgctgtaccgc
gcctaccaggagcggctcaaggctctcaacgcctgcgatttcggcgacctgctgctgcat
gtgctgaccgtgttcctgtccgacgcggaagccctggcccgctggcagggccgtttccgc
tacctgctggtggacgaataccaggacaccaacgtggcccagtatctgtggctgcgcctg
ttggcccagacccatcgcaacatctgctgcgtcggcgacgacgaccagtccatctattcc
tggcgcggcgccgaggtgggcaacatcctgcgcttcgagaaggacttccccggggccaag
gtggtgcgcctcgaaagcaattaccgctcgaccccccacatcctggcggcggcctcggcc
ctgatcgccaacaatgccgggcggctgggcaagacgctgcgccccggtctggcccatgac
gattccgccatcgagaagatccgcaccatggcggtgtgggacggcgaggccgaggcgcgc
ctcgtggtcgaggagatcgaggcgctgcagcgcaagggcgagaagctgtcctccatggcc
atcttagtgcgcgccggcttccagacccgcgagttcgaggaacggctgatcaccaccggc
attccctatcgcgtcatcggcggaccgcgcttctacgagcggctcgagatccgtgacgcc
atggcctatctgcgcctggtggtctcggcctcggacgggctggccttcgagcggatcgtc
aacacgcccaagcgcggtctgggcgaggccgccatccagaccatccaccttgccgcccgc
gccgagcaggtgccgctgctggaggccgcccgccggctgaccggcaccgacgagttgaag
cccaagccgcgtcaggccctggccaagttcgtcgaggatgtggaccgctggcgctcgctg
ctcgattccatgccccacgccgagctggccgccacgatcttggacgaatccggctatgtg
gacatgtggaaggccgacaagtcggccgacgcgccgggccgggtggagaacctgaaggaa
ctggtggcggcgctggaggaatacgattcgctgcccagcttcctcgaacacgtggccctg
gtcatggaaaacgattccaaggccgaagccgacagcgtggtgatcatgacgctgcacggg
gccaaggggctggaattcgattcggtgttcctgcccggctgggaggaggaggtcttcccc
catatccgcgctctgtccgaatccggcacctccgggctggaggaggagcgtcgcctggcc
tatgtggggctgacgcgggcccgcaagcgggtgctggtcaccttcgccgccaaccgccgc
atctacaaccagtggaaatcccagctgccgtcccgcttcgtcgaggaactgcccgagtcc
catgtggaacgctcgggcgagcgcgggctgtacggcggcgggctggcggaatccaaggcg
gcctggaacgatcccgcctggagccgtgcccgcttcggccagccccgtgcggccgccgcg
cccaccgcctggagccagcccaaggcccgtcagagcgaaggcggcttcaaaccgggccag
cgggtcttccacgacaagttcggcaacggcaccgtgctgtcgctggacggcaacaagctg
gagatcgccttcgacaaggcgggaaccaagaaggtgctcgacagtttcgtttcggcgatt
tga
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