Magnetospirillum sp. XM-1: XM1_4697
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Entry
XM1_4697 CDS
T04231
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma 70 (sigma D) factor
KO
K03086
RNA polymerase primary sigma factor
Organism
magx
Magnetospirillum sp. XM-1
Pathway
magx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
magx00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
XM1_4697 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
magx03021
]
XM1_4697 (rpoD)
Transcription machinery [BR:
magx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
XM1_4697 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
EFhand_Ca_insen
Med21
Motif
Other DBs
NCBI-ProteinID:
CUW41741
UniProt:
A0A0U5MPH9
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All DBs
Position
I:4735139..4737187
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AA seq
682 aa
AA seq
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MATKSTNTAEVSENQDEAMDGPLLDTLGVAVKKMVAKGKERGYVTYDELNAAMPPDEVSS
EQIEDTMAMLSELGINVVESEEGEDNAAEAAEEETTETEGYSGAGNVDEEDLGRTDDPVR
MYLREMGSVELLSREGEIAIAKRIEAGREMMIGGICESPLTLRAVVEWHDALVEGKMLLR
DIIDLDATYGADPEADELAEVEMEAAAEAAPVEEPAEGKAEAPAEAKGEAGSEEKEEGAE
GETEGEGEGEAEGEAEEGEENSISLAAMETELLPIVLETFEVIAATHHKLEKVQDQRLAA
LNKGEAVTAAMEKKYDKLKAELVRLMDGIHLNNARIEQLVEQLNGLNRRLMMQEGRLLRL
AESCRVKRQDFLDAYYGSELDPNWIEQVTQRSKQWKDFATRHGKEAADIRATIADISTEA
GLPISEYRRIVQTVQRGEREASKAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIG
LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQML
HEIGREPTPEELAEKLSMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLP
LDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIE
AKALRKLKHPSRSRKLRSFLDT
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaatcgacgaatacggccgaagtttccgagaaccaggacgaggcgatggat
ggcccgctgctcgacaccctgggcgtcgccgtcaagaagatggtggccaagggcaaggag
cgcggctacgtcacctatgacgagctgaacgccgccatgccccccgacgaggtgtcgtcc
gagcagatcgaagacaccatggccatgctgtccgagctgggcatcaacgtggtggaaagc
gaggaaggcgaggacaacgccgccgaggccgccgaggaagagaccaccgagaccgagggc
tattccggcgccggcaacgtcgacgaggaagacctgggccgcaccgacgacccggtccgc
atgtacctgcgcgagatgggctcggtcgagctgttgagccgcgagggcgagatcgccatc
gccaagcgcatcgaggccggccgcgagatgatgatcggcggcatctgcgaaagcccgctg
acgctgcgcgccgtggtcgagtggcatgacgccctggtcgagggcaagatgcttctgcgc
gacatcatcgacctggacgccacctacggcgccgaccccgaggccgacgaactggccgag
gtggagatggaggccgccgccgaggccgcccccgtcgaggagcccgccgaaggcaaggcc
gaagctccggccgaggccaagggcgaggccggcagcgaggagaaggaagagggcgccgag
ggcgaaaccgagggtgagggcgaaggcgaggccgagggcgaggccgaggaaggcgaggag
aactccatctcgctggccgccatggaaaccgagttgctgcccatcgtgctcgagaccttc
gaggtcatcgccgccacccaccacaagctggagaaggtccaggaccagcgcctggccgcc
ctcaacaagggcgaggcggtcaccgccgccatggagaagaagtacgacaagctgaaggcg
gaactggtccgcctgatggacggcatccacctcaacaatgcccgcatcgagcagctggtc
gagcagttgaacggcctgaaccgccgcctgatgatgcaggaaggccgcctgctgcgcctg
gccgaaagctgccgcgtcaagcgccaggacttcctcgacgcctattacggctcggagctg
gaccccaactggatcgagcaggtcacccagcgctccaagcagtggaaggacttcgccacc
cgtcacggcaaggaagccgccgacatccgcgccaccattgccgacatctccaccgaggcc
ggcctgcccatcagcgaataccgccgcatcgtccagacggtgcagaggggcgagcgcgag
gccagcaaggccaagaaggagatgatcgaggccaacctgcgcctggtgatctccatcgcc
aagaagtacaccaaccgcggcctgcagttcctggacctgatccaggagggcaacatcggc
ctgatgaaggcggtggacaagttcgagtaccggcgcggctacaagttctccacctatgcc
acctggtggatccggcaggccatcacgcgctccatcgccgaccaggcccgcaccatccgc
atcccggtccacatgatcgagaccatcaacaagctggtccgcacgagccgccagatgctg
cacgagatcggccgcgagccgaccccggaagagctggcggaaaagctgtccatgccgctg
gagaaggtccgcaaggtcctgaagatcgccaaggagcccatcagcctcgagacccccatc
ggcgacgaggaagacagccatctcggcgacttcatcgaggacaagaacgccgtcctgccg
ctggacgccgccatccaggccaacctgcgcgagaccaccacccgcgtcctggcctcgctc
acgccgcgcgaggagcgcgtgctgcgcatgcgtttcggcatcggcatgaacaccgaccac
accctggaggaagtcggccagcagttcagcgtgacgcgcgaacgcatccgtcagatcgag
gccaaggcgctcaggaagctcaagcacccgtcgcgctcgcgcaagctgcgctcgttcctg
gatacctag
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