Methylotuvimicrobium alcaliphilum: MEALZ_0270
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Entry
MEALZ_0270 CDS
T01649
Name
(GenBank) conserved protein of unknown function
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mah
Methylotuvimicrobium alcaliphilum
Brite
KEGG Orthology (KO) [BR:
mah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mah03016
]
MEALZ_0270
Enzymes [BR:
mah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MEALZ_0270
Transfer RNA biogenesis [BR:
mah03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MEALZ_0270
Prokaryotic type
tRNA splicing ligases
MEALZ_0270
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CCE21970
UniProt:
G4SW49
LinkDB
All DBs
Position
complement(288861..290291)
Genome browser
AA seq
476 aa
AA seq
DB search
MDLKQFIQRDETCWKIPAKGAMRVPAIIYADASLLQAMDQKVHEQICNVAALPGIVEAAY
AMPDAHWGYGFPIGGVGAFDADQGGVISAGGVGFDISCGVRTLHTGLTMNDLQGVKKDLA
DELYRSVPAGVGSRGLIHLNHDEMRAMLTGGAQWAVDQGFGEARDLEFTEERGRVDGAEP
RDVSPRARERQKDEMGTLGSGNHYLEVQRVVEIFDQEVAEAYRLKLDAIVISIHCGSRGL
GHQIGTEFLKDMALAASQYHITLPDRELACAPLNSPLGKRYLGAMRAGINCALANRQIIT
HLTRQAMNEIFPGISIDLLYDVSHNTCKEERHIVAGSAQTVFVHRKGATRAFGPGHADLP
TEYQSVGQPVLIGGSMGTSSYILCGTKQAEQRSFSSACHGAGRAMSRRQATKQWHGRALV
DQLAEQGILIRSPSLRGVAEEAPAAYKDVSAVVDSADKAGLAKKVARLEPVICIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggacctcaaacaattcattcaacgcgatgaaacttgctggaaaatcccggcgaaaggc
gcgatgcgagtgccggcaattatttatgccgatgcctcgctgttgcaagcgatggaccag
aaagtccatgaacagatttgcaatgtcgcggcgctaccgggcatcgtcgaggcggcctat
gcgatgcccgacgcgcattggggctacggttttcctatcggcggcgtcggggcgttcgat
gcggaccaaggcggcgtgatttctgccggcggcgtcggcttcgacatctcctgcggcgtt
cgcacattgcatacaggcctgacgatgaacgacttgcaaggcgtcaaaaaagacctagcc
gacgaactctaccgctccgtgccggccggggtcggcagccgaggcctcattcatttgaat
cacgacgaaatgcgcgcgatgctgaccggcggcgcgcaatgggccgtcgatcagggcttc
ggcgaagcacgcgatctcgaattcaccgaggaacgcggccgcgtcgacggcgccgaaccg
cgcgatgtatcgccgcgcgctcgcgagcggcaaaaagacgaaatgggcacactcggctcc
ggcaatcattatcttgaagtacagcgtgtcgtcgaaattttcgatcaggaggtcgccgaa
gcctaccggctcaagcttgatgcgatcgtgatcagcattcattgcggttcccggggactg
gggcatcaaatcggcaccgagttcttgaaagatatggcgctcgcggcgtctcaatatcat
attaccctgcccgaccgcgaactggcctgcgcgccgctgaattcgccgctgggcaagcgc
tatctcggcgcgatgcgtgccggcatcaattgcgcgctcgcgaaccgacaaatcatcacg
catttgacgcgccaagcgatgaacgaaatttttccgggcatttcaatcgacctgctctac
gacgtctcgcataatacctgcaaagaagaacgccatatcgttgccggttcggcacagaca
gtcttcgtccatcgcaaaggcgcgacgcgagccttcggccccggccatgccgacttgcct
accgaataccaatctgtcggccaaccggtcttgataggcggctcgatgggcacgagttcc
tatattttgtgcggcaccaaacaggcagagcaacgctcgttcagttctgcttgccacggc
gcggggcgggcaatgagtcgacgccaggccacaaaacagtggcacggacgggcgttggtc
gatcaattggccgaacaaggcattctgattcgcagcccatcattacgaggcgtcgccgaa
gaggcgccggccgcttacaaagacgtcagtgcggtcgtcgactccgccgataaggctggt
cttgcgaaaaaagtcgcgcgcctcgagcctgtcatttgcatcaagggctga
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