Methylotuvimicrobium alcaliphilum: MEALZ_1409
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Entry
MEALZ_1409 CDS
T01649
Symbol
rnr
Name
(GenBank) RNase R, 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mah
Methylotuvimicrobium alcaliphilum
Pathway
mah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MEALZ_1409 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mah03019
]
MEALZ_1409 (rnr)
03016 Transfer RNA biogenesis [BR:
mah03016
]
MEALZ_1409 (rnr)
Enzymes [BR:
mah01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MEALZ_1409 (rnr)
Messenger RNA biogenesis [BR:
mah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MEALZ_1409 (rnr)
Transfer RNA biogenesis [BR:
mah03016
]
Prokaryotic type
tRNA degradation factors
MEALZ_1409 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_RNR_1st
OB_HELZ2
CSD
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
CCE23097
UniProt:
G4SX42
LinkDB
All DBs
Position
1586203..1588437
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AA seq
744 aa
AA seq
DB search
MKSKDKKPNFTPTRDPYAAREAAKYENPIPSRELILDLLAHVGKPLSRDQISQEFQLESP
DQLEALRRRLRAMERDGQLLFNRRQKYCRVNSKDLIAGRILGHADGFGFLKPDDGSDDLF
LSPREMRSVLHNDRAVARIAGLDRKGRREGAIVEVLERNTKQIVGRFFTEKGVNYVVPDN
KNLAQDVLIPGDETGKAKKGDIVVAEILEQPSKTNQPIGRVAEVLGKHLAPGMEIEMAIR
SHGLPHVWPEEVEQEIQSFSDEVPEAAKEGRVDLRDVPLVTIDGEDARDFDDAVYCRKTG
KGWKLFVAIADVSHYVAINSALDLEAKNRSTSVYFPEQVIPMLPEILSNGLCSLNPEVDR
LCMVCEMTINAEGQMTRSRFFEAVMRSHARLTYTEVASMLVDGNKALIKKYKPLMPHLQE
LYALYKAMRLSREKRGAMDFDTQETRIIFGSERKIEKIVPVVRNDAHKLIEEFMITANMA
AAKFLNRRKMPKLLRIHDGPGPEKLLALKTFLGEVGLSLGGGEKPTPLDYMHLVDSIKGR
PDAHLIQTVLLRSMSQAVYSPDLKGHFGLALDAYAHFTSPIRRYPDLLVHRAIRHCLQDK
KPESYHYGFPDMVTLGEQCSTNERRADDATRDVVSWLKCEYMMDKVGEEFPGIISAVTSF
GFFVELADIYVEGLVHISNLAQDYFHFDAASHQLIGERTGIRYRLGDTVQVKVVRVDLDD
KKIDFELVKVTALAKRPKKRRRKK
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtctaaagataaaaaaccaaattttactccgacccgagatccttacgcggcgcgg
gaggcggcgaaatacgaaaacccgatacctagtcgggagttgattctcgatctgctcgcc
catgtcggtaaaccgttgtcgcgcgaccaaatttctcaggaatttcaactcgaatcgccc
gaccagttggaggccttgcgcagacggcttcgtgcgatggaacgggacggacaattatta
ttcaatcggcgccaaaaatactgccgggttaacagcaaggatttgattgccgggcgcatc
ctcggtcatgccgatggctttggatttttaaagccggatgacggttccgacgatttattt
ttgtctccccgtgaaatgcgttcggttctgcacaatgacagggccgtcgcgagaatcgcc
ggtctcgaccggaaagggcgccgcgaaggtgctattgtcgaggttttggagcgcaatact
aagcaaattgtcggccgattttttaccgaaaaaggtgtcaattacgtcgttccggataat
aaaaacctggcgcaagacgtgttgataccgggtgatgaaaccggcaaagcaaaaaaaggc
gatatcgttgtcgccgaaatcctggagcaaccgagtaagaccaatcagcccatcgggcgc
gttgccgaggttctgggcaagcatttggctccgggcatggaaatcgagatggcgattcgc
agccatggtctgccgcatgtttggccggaagaggttgaacaggaaattcagtcattcagc
gatgaagtgccggaagccgctaaggaaggacgtgtcgatttgcgagatgttccgctggtg
acgatagacggcgaggatgcgcgcgattttgacgatgcggtgtattgccgtaagactgga
aagggttggaagctttttgtcgcgatcgccgatgtgtctcattatgtcgcgatcaatagc
gcattggatcttgaggccaaaaaccgcagtacttcggtttattttccggaacaggtgatt
ccgatgttgccggaaattctttcgaatggactctgttcgcttaatcccgaagtcgaccgt
ttatgtatggtctgcgagatgacgatcaatgcggaagggcagatgacgcgttcgcgtttc
ttcgaggccgtgatgcgttctcatgctcgcctgacttataccgaagtcgctagcatgctg
gtcgatggcaataaagctttaattaaaaaatataagcctttaatgccgcatttgcaggaa
ctgtatgctttgtacaaagccatgcgtttaagccgagaaaaacgcggtgcaatggatttc
gatactcaggaaacccggattattttcggttccgagcgtaagatcgaaaagatcgttccg
gttgtgcgtaacgatgcacataagctgattgaagagtttatgatcaccgcgaacatggcg
gcggctaaatttctcaatcgccgaaaaatgcccaagttactgagaattcatgacgggccc
ggaccggaaaaattattggcgctgaagaccttcttaggtgaagtgggtctgagtttgggt
ggtggtgagaagccgacgccgctcgattacatgcatctagtcgatagtattaaagggcgc
ccggatgctcacttgattcaaacggttttgctgcgttcgatgtcgcaagccgtttacagt
cccgatttgaaaggtcatttcggcttggcgctcgacgcctatgctcattttacgtcgccg
attcgccgttatcccgacttgttggtgcatcgggccatccgacattgtttacaagacaaa
aagccggaaagttatcattacggatttcccgacatggtcacgcttggcgagcaatgctcg
acgaatgagcgccgagccgatgatgcgacacgcgatgtcgttagttggctcaagtgcgaa
tacatgatggacaaggtcggcgaagagtttccgggtattatttcggcggtgacgtcgttc
ggtttttttgtcgagcttgccgatatttatgtcgagggtcttgttcatatcagtaatctg
gcccaagattattttcatttcgatgctgccagtcatcaattaatcggcgaacgtacgggc
attcgttatcgtcttggcgataccgtgcaagtgaaagtcgtacgtgtcgatctcgacgat
aaaaaaatcgatttcgaactggtcaaggttactgccttggcaaagcgcccgaaaaaaaga
cggcgtaaaaaatga
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