Methylotuvimicrobium alcaliphilum: MEALZ_1563
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Entry
MEALZ_1563 CDS
T01649
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mah
Methylotuvimicrobium alcaliphilum
Pathway
mah03410
Base excision repair
mah03430
Mismatch repair
mah03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MEALZ_1563 (recJ)
03430 Mismatch repair
MEALZ_1563 (recJ)
03440 Homologous recombination
MEALZ_1563 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mah03400
]
MEALZ_1563 (recJ)
DNA repair and recombination proteins [BR:
mah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MEALZ_1563 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MEALZ_1563 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MEALZ_1563 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Glyco_transf_4
Ax_dynein_light
PhoU
Motif
Other DBs
NCBI-ProteinID:
CCE23250
UniProt:
G4SZB3
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All DBs
Position
1778947..1780692
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AA seq
581 aa
AA seq
DB search
MYSQGVKKTIIPRPPGKKKLDLGDMHPVLQRIFLSRGIKSADELDRSLAGLPSPWLLSGM
KDMVAHLIEALSQQQRITIVADFDADGATSCALAIRGLRMLGAVNVDFIVPNRFEYGYGL
TPEIVELVKRQEPEMIITVDNGISSIAGVDAAKALGIKVLVTDHHLPGESLPEADAIVNP
NLPDEPFPSQALAGVGVMFYVLTALRSRLREIDWFQQQAIPEPNLAQLLDLVALGTVADV
VPLDQTNRILIHQGLQRIRSGRCHPGILALIEVSGRNYRYLSSSDLGFAVGPRLNAAGRM
DDMALGIQCLLTDDVSLAKDIAQQLDEMNRDRRDIEGQMKIEAMSLLNEMKALDEKHLPA
GVCLFDENWHQGVIGILASRIKDRLHRPVIAFAPAGNGEIKGSARSIPGVHIRDVLSDMA
SAHPNILNKFGGHAMAAGMSIQMHDYPPFALAFDEMVGRRIANMDLEQKVYSDGELSENE
LTLEFAELLQRSGTWGQEFPEPVFDGVFEVIQARIVGQHHLKLVLRQAENKQLIDAIAFF
IEKPEQWLGIRTIHAAYKLDINEYRGNRALQFVIQYLEKLN
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtactcccaaggcgttaaaaaaacaattattccccgtcctccgggtaagaaaaagctg
gatttgggtgatatgcacccggttttgcagcgcatatttctaagccggggtattaaatcc
gcggatgaattagaccgttcgttggctggattgccttcgccgtggcttttgtccgggatg
aaggacatggttgctcatttgattgaagcgctaagtcagcagcagcgaatcactattgtg
gccgatttcgatgccgacggggcgactagttgcgctcttgctatcagaggcttgcgcatg
ctcggagcggtcaatgtcgacttcatcgtgccgaatcgtttcgaatacggatacgggttg
acgccggagattgtagagttggtcaaacgccaagagcccgaaatgattatcaccgtcgat
aatggcatatcgagcatagccggcgttgacgcggctaaggcgctgggtatcaaagttttg
gtcaccgatcatcatttacccggagaatcacttcctgaggccgatgcaatcgtcaatcct
aatttacccgacgaaccttttcctagccaagcattggctggtgtcggtgtgatgttttat
gtcctgactgcattaagaagtcgtcttcgggaaatcgattggtttcaacaacaagccatc
cccgaaccgaatctagcgcaattactggatttggttgccttgggcacggtcgcagatgtc
gtgccgctcgatcagaccaatcgaatcttgattcatcaaggcttgcagcgaattcgttcg
ggccgttgccatccgggaatattggccttgatcgaagtatcggggcgtaattatcggtat
ctatcttcatccgacctgggctttgcagtgggaccaaggctcaacgctgccgggcgcatg
gacgatatggcgctgggtattcagtgtttgctgactgatgatgtttctttggccaaggat
atcgcacagcagcttgacgagatgaacagggatcgccgggacatcgaaggtcagatgaag
atcgaagcgatgagtctgttgaacgaaatgaaagccttagatgaaaaacatctaccggcc
ggcgtttgcttgttcgatgaaaattggcatcaaggtgtgatcggtattctcgcatcgaga
atcaaggatagacttcatcggccggtcatagctttcgcaccggccggtaacggcgaaatc
aaaggttcggcgcgatcgattcccggtgtgcatatccgcgacgttctgagcgacatggcc
tcggctcatcccaatattcttaataagttcggcggtcatgcgatggcggccggaatgagc
atacaaatgcatgattatccgccttttgcgttagccttcgatgagatggtcggtcggcgt
atagcgaatatggacctggaacagaaggtgtattccgacggggaattgtcggaaaacgag
ttgacattggaattcgctgagttgttgcaacgttcaggcacttggggacaggagtttccg
gagccggttttcgatggtgtgttcgaagtcattcaggcccgtatcgtcgggcagcatcat
ttaaaattggtgctacgccaggccgaaaacaagcagttgatcgacgcgattgctttcttt
atcgaaaagcccgaacaatggctgggaattcgaacgattcatgctgcttacaagttggat
atcaatgaataccgaggcaatcgagccctacaatttgtgattcagtatctggaaaaactc
aattaa
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