Methylotuvimicrobium alcaliphilum: MEALZ_1980
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Entry
MEALZ_1980 CDS
T01649
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase hrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mah
Methylotuvimicrobium alcaliphilum
Brite
KEGG Orthology (KO) [BR:
mah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mah03019
]
MEALZ_1980 (hrpA)
Enzymes [BR:
mah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MEALZ_1980 (hrpA)
Messenger RNA biogenesis [BR:
mah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MEALZ_1980 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
AAA_23
T2SSE
NACHT
AAA_25
ResIII
AAA_30
SRP54
PhoH
Motif
Other DBs
NCBI-ProteinID:
CCE23666
UniProt:
G4T313
LinkDB
All DBs
Position
2273894..2277781
Genome browser
AA seq
1295 aa
AA seq
DB search
MSIHAQFKQLAHRLPECLNQDRHRLKRQLDRLRKDAKNGKVPSDKLTDLTGRIEQSAALF
SKRRASIPAISFPDLPVSGKKDEIAQLIQDHQVVIVCGETGSGKTTQLPKICLAIGRGSA
GYIGHTQPRRIAARTVADRIAEELGEPVGKSVGYKVRFHDQTRKESLVKLMTDGILLAET
QNDPYLNQYDTIIIDEAHERSLNIDFLLGYMKWLLPKRPDLKLIVTSATIDPERFSKHFA
DAPIIEVSGRTYPVEIRYRPIEQIEEGDETTADLQMAILDAVDELARDMRGDILIFLSGE
REIRETTESLRKHHPTGYEILPLYSKLSVAEQERVFKPKGGQRIVLATNVAETSLTVPGI
RCVIDTGHARISRYSHRSKIQRLPIERISQASANQRAGRCGRVAEGICIRLYSKEDFQVR
PVFTEPEILRTNLSSVILQMIALNLGDIEDFPFIEPPEDKMIRDGKTMLHEVNALDKQGN
LTEIGKQLAKLPTDPKLARMLLAAADYQCLHEVSIIVAALSIQDPREKPADKMQQADAKH
AVFRHEESDFLTLLNLWNHFEEQKKHLSNNKLRKYCKDQFISYVRMKEWFDIHAQIMQVI
KGELKLKPNMIEAGYGEIHRALLPGLLSNIGFRHEQYEYLGARGLKFFIFPGSGLHKPRP
KWIMAAEQVETSKVYARTVARIEPEWIEACSGHLVKRNYYDPHWEKKAGRSGIYERTLLY
GLTLQAKRKIPYEHVDPKAARDYFIRFGLVNQDYQTNAPFFKANQQLLEEVGYIQHKGRR
VDLIEDEEWLYQFYDKKIPESVVNSITFDQWRKSVERDNPKFLFLTKEDLTREQDDFINE
WDFPDSKQIGRLSFDLQYRFEPGHDEDGVTAVIPVHQLNQVIAQPFDWLVPGMLEEKLIA
LIKSLPKQLRKHFVPVPQTAKQCLEIEPDFKGSLYEWLGMRLRKLTGEAIPLTEWHPETL
PEHLTMNFRIVDEQGKLLDYGRDLKKLQDKYAVEAVDSFDKKAADELNFTGCIQWAFDDL
PETYEFIHEGQSFIGFPAIVDEGDAVGVKIFDTRDKADRLHRAGLTRLFQLQLKKEKTYL
AKNMPHSTAAELTVNQLPEHSILKDHAGASYKEDLLYLVFLELFVGDRVIRTQKDFEQSI
REHKGGLVAFANEVGKLTLDIVERYQGVKKRLSRLQQDNATVLDINEQLCLLIYSGFIRH
TPFAQLKHLPRYLKTIDYRLDKIVGDASKIPIVQRYCTRYWKDIANRAKKTVVLPEQEAF
RWMLEEFRVSVFAQQLKTPYPISEKRIEKAWDQRQ
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgtccatacacgcacaattcaaacagcttgcccatcgattaccggaatgcctgaatcaa
gaccgccatcgcctgaaacgccaactcgaccgtttgcgcaaagacgccaaaaatggcaag
gtcccgtccgacaaacttactgacttgaccggccgcatcgaacaatcggcagcattgttt
tcgaaacggcgcgcgtcgatacccgccatctcatttcccgatttgccggtcagcggcaaa
aaagacgaaatcgcgcagttgattcaagaccatcaagtcgtgatcgtctgcggcgagacc
ggctccggcaagaccacgcaattgccgaaaatctgtttggctatcggacgaggctctgcc
ggctacattggtcacacgcaaccgcgccgcatcgccgcgcgcacggtagcggaccgcatt
gccgaggagttgggcgaaccggtcggcaaatcggtcggttacaaggttcgttttcacgat
caaacgcgcaaggaatcgttggtcaaattaatgactgacggtattttgttggccgaaacg
caaaacgacccgtatctgaatcagtacgatacgatcatcatcgacgaggcacacgagcgc
agcctgaatatcgattttctgctcggctacatgaaatggctgttgccgaaacgccccgat
ctgaaattgatcgtgacctcggctacgatcgacccggagcgtttttcgaaacatttcgcc
gatgcgccgatcatcgaggtatcgggccgcacctatcctgtcgaaattcgttacaggcct
atcgaacagatcgaggaaggtgacgaaacgacggccgatttacaaatggctattttggat
gcggtcgacgaactcgcgcgtgatatgcgtggcgatattttgatatttttgagtggcgag
cgggaaatccgcgaaacgaccgagtcgctgcgcaagcatcatccgaccggctacgaaatt
ctgccgctgtattcgaaactcagcgtcgccgaacaagaacgtgtattcaagccgaaaggc
ggacagcgcatcgtgctcgcgaccaatgtcgccgaaacgtcgttgacggtgccgggcatt
cgctgcgtgatcgataccggacacgcgcgtattagccgttatagtcatcgcagcaagatt
caacgtctgccgatcgagcgcatctctcaggccagtgccaatcaaagggcagggcgctgc
ggccgcgtcgcggagggtatctgcattcgcctgtattcgaaggaggattttcaagtacgt
ccggtatttaccgaaccggaaattctgcgtaccaatctgtcgtcggtgattctgcagatg
attgcccttaaccttggcgatattgaggattttccgtttatcgagccgcccgaagacaag
atgatccgcgacggcaaaacgatgctgcatgaagtcaatgcgctcgataaacagggtaat
ttgaccgaaatcggtaagcaactggccaaattgccgaccgatcctaaattggctaggatg
ctgctggcagccgccgactatcaatgcctccatgaagtatcgattattgtcgcggcgctg
agcattcaagatccccgtgaaaaaccggccgacaagatgcaacaggcggatgccaaacat
gccgttttccgccatgaagaatcggattttctgaccttgctgaatctgtggaaccatttc
gaggagcagaaaaagcatttgtcgaacaacaagctgcgtaaatattgcaaagatcagttt
atatcctatgtccgcatgaaggaatggttcgacattcatgcgcagatcatgcaggtgatc
aaaggcgaattgaagctcaagccaaacatgatcgaggccggttacggcgaaattcaccgc
gccttgctaccgggcttgttgtcgaatatcggcttccggcacgagcaatacgaatacctc
ggcgcgcgcggactcaagtttttcatctttccgggttcgggattgcacaagccgcgtccg
aaatggatcatggccgctgaacaggtcgaaacgtctaaagtttacgcaagaacggtcgcc
cgcatcgaaccggaatggatcgaggcctgttccgggcatctggtcaagcgcaattattac
gatccgcattgggagaagaaggcagggcgtagcggtatctacgagcgcacgctgctgtac
ggtttgactttgcaggcgaagcgcaagataccttacgaacacgtcgatccgaaggcagcg
cgcgattattttattcgtttcggccttgtcaatcaggattatcaaaccaatgcaccgttc
ttcaaggccaatcaacaattgctcgaagaagtcggctacattcagcacaagggccggcgc
gtcgatttgatcgaggacgaggaatggctgtatcagttttatgataaaaaaattcccgaa
tcggtcgtcaatagcattacgttcgatcagtggcgtaaaagcgtcgaacgcgacaatccg
aaatttctgttcctgaccaaggaggatttaactcgcgagcaggatgatttcatcaacgaa
tgggattttccggacagcaagcaaattggacgtttgagtttcgatttgcaatatcgtttt
gaaccggggcacgacgaagacggcgtgactgcggtcattccggtgcatcaactcaatcaa
gtgatagcgcaacctttcgattggttggtgccgggcatgctggaagaaaaactcatcgcg
ttgatcaagtcgttgccgaaacaactgcgtaagcatttcgtgccggtgccgcagacagcg
aagcagtgcctcgaaatcgagcctgatttcaagggttcgctctatgagtggctcggcatg
cgtttgcgcaaattgaccggcgaagcgattccgttgaccgaatggcatccggaaaccttg
cccgagcacttgacgatgaattttcgtatcgtcgacgagcaaggtaagttgctcgactac
gggcgcgatctaaaaaagctacaggataaatacgccgtcgaggctgtcgacagtttcgac
aaaaaggccgccgatgaattgaatttcacaggctgtattcaatgggccttcgacgatttg
ccggaaacttatgaattcatacatgaaggtcagtcgtttatcggcttcccggcgatcgtc
gacgaaggcgatgcggtcggcgtcaagattttcgatacgcgtgataaagccgaccgcttg
cacagagctggtttgactcggctgttccagttgcagttgaaaaaggaaaagacctatttg
gcaaaaaacatgcctcattccacggctgctgagctaacggtcaatcagttgcctgaacat
tcgatactaaaagatcatgcgggcgcctcttacaaagaagatttactttacttagttttt
ctcgaattgttcgtcggcgatcgcgtcatccggacgcagaaagatttcgaacagagtatt
cgcgagcacaaaggggggttagtagcgttcgcaaacgaggtcggcaaactgacgctggat
attgtcgaacgctatcaaggcgtcaaaaaacgcctgtcacggttgcaacaggacaacgcg
accgtgctcgatatcaacgaacaattgtgcctattgatttattctggtttcattcgtcat
acgccgtttgcacagctcaaacacctgcctcgctacctgaagacgatcgattaccgtctc
gataaaatcgtcggcgatgcctccaaaatcccgatcgtgcagcgttattgcacgcgctac
tggaaagatattgcgaaccgagctaagaaaaccgtcgtgctaccggaacaagaagcgttc
cgctggatgctcgaggaatttcgcgtgtcggtgttcgctcagcaattaaaaaccccgtat
ccgatttcggaaaagcgcatcgaaaaggcctgggatcagcggcaatag
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