Micavibrio aeruginosavorus ARL-13: MICA_1349
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Entry
MICA_1349 CDS
T01630
Name
(GenBank) metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mai
Micavibrio aeruginosavorus ARL-13
Pathway
mai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICA_1349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mai03019
]
MICA_1349
Messenger RNA biogenesis [BR:
mai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MICA_1349
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RMMBL
Lactamase_B
RNase_J_C
Motif
Other DBs
NCBI-ProteinID:
AEP09671
UniProt:
G2KSS1
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Position
complement(1344792..1346501)
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AA seq
569 aa
AA seq
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MTKKNNKKTRSVEDFSIDPDFVHFIPLGGSEQFGVNLNVYGYQGKWLAIDCGIGFAGHRF
PGIDLLLPDPEFIADRADDLVGLVVTHAHEDHVGAVAHLWSRLRCPIYCTAFTASVLRQK
FNDLPGSSNAKIHVVSPGQMLNLAPFEMEFIHVAHSIPQAVAVAIKSPHGHIVHSGDWNL
DPEPVIGDNTDAAAFKRLGDEGVLAYIGDSTNAEVPGNTLSEMEVQRGLTALFGEVKGRI
AITIFASNIGRVHSICKAAEANGRSVALLGRSLHRMTGAARECGYLNDVRPFLEEDEIDS
VPDENLVMIVTGSQGEARAMLARIARAEHPFIRFNRGDTVIFSARPIPGNEEEINVVKNN
LSATGVHIVTPLDTNHLIHVSGHPYRDDILEMFSWVRPKIVIPVHGERVQLAAQSRLALG
AQVSSSIVPNNGSVIRLDPKGAEVVDHVRTGTLAVEPSRLIPADHQAIATRRKLQFTGTV
HVTLVVDDRGDLISDPRVSTMGLIDHDSPEEKKLEHDLVDEIEDLFVDLDIDAKRTDDSI
AEEVRIVARRFISDILGLKPKTSVHVVRV
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaagaacaataaaaagacgcgcagcgtcgaagatttctccatcgatcccgat
ttcgttcacttcatcccgctgggtggcagtgagcaatttggcgtgaacctgaacgtctat
gggtatcagggcaaatggctggccatcgattgtggtatcggttttgccgggcaccgtttc
ccgggcattgatctgcttttgccggatccggaatttatcgcggatcgtgccgatgatctg
gtcggtttggttgtgacccatgcgcacgaagatcacgtgggtgcggttgcgcatctgtgg
tcgcgcctgcggtgcccgatttattgcacggcctttaccgccagcgtgttgcgccagaaa
ttcaacgacctgccgggcagcagcaatgccaaaatccatgtggtgtcgccggggcagatg
ttgaaccttgcgccgtttgaaatggaatttatccatgtggcgcactcaatcccgcaggct
gtggccgttgcgatcaaatcgccgcatggccatatcgtgcacagtggtgactggaacctc
gaccccgaaccggtcattggtgacaacaccgatgccgcagcgttcaaacgtttgggcgat
gaaggggttctggcttatatcggcgattctacgaacgccgaagttccgggcaacacgttg
tcggagatggaggtccagcgtggcctgaccgccttgttcggcgaagtgaaagggcgaatt
gccattacgatttttgcgtccaacattggccgcgttcattccatttgcaaggcagccgag
gccaatggccggtccgttgccttgctggggcggtccttgcaccgcatgactggtgcggcg
cgtgaatgcggatacttgaacgatgtgcgcccatttttggaagaggacgagattgattcc
gttccggacgaaaatctggtgatgatcgtgacgggatcgcagggcgaggcgcgggcgatg
ctggcgcggattgcgcgggccgaacacccgtttattcgtttcaatcgcggcgacacggtg
attttctccgcgcgcccgattccggggaacgaagaagaaatcaacgtcgtgaaaaacaat
ctgagcgcgacgggcgtgcatatcgtgacaccgctggatacaaaccacctgatccacgta
tccggtcacccgtaccgcgatgatattctggagatgttcagttgggtgcgcccgaagatc
gttattccggttcacggcgaacgtgtgcaactggcggcgcagtcgcggctggctctgggg
gcgcaggtgtccagttccatcgtacccaataacgggtccgtcatccgtctggacccgaag
ggggccgaggtggtcgatcatgttcgtacgggcacgctggcggttgagccgtcccgtctg
atcccggcggatcaccaggcgattgccactcgccgcaagctgcaatttaccggcacggtc
catgtgactttggttgtggacgaccggggtgacctgatttccgatccgcgggtgtcgacc
atgggtctgattgaccacgacagcccggaggaaaagaagctggagcatgatctggtcgat
gaaatcgaggatttattcgtcgatctggacattgatgcaaaaaggacggatgatagcatc
gccgaagaagttcggatcgttgcacgccgttttatcagcgatattctagggttaaagccg
aaaacgtctgtgcatgttgttcgtgtttga
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