Micavibrio aeruginosavorus ARL-13: MICA_1952
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Entry
MICA_1952 CDS
T01630
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mai
Micavibrio aeruginosavorus ARL-13
Pathway
mai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICA_1952 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mai03019
]
MICA_1952 (rnr)
03016 Transfer RNA biogenesis [BR:
mai03016
]
MICA_1952 (rnr)
Enzymes [BR:
mai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MICA_1952 (rnr)
Messenger RNA biogenesis [BR:
mai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MICA_1952 (rnr)
Transfer RNA biogenesis [BR:
mai03016
]
Prokaryotic type
tRNA degradation factors
MICA_1952 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
WHD_RNase_R
Lyase_aromatic
Motif
Other DBs
NCBI-ProteinID:
AEP10261
UniProt:
G2KNL6
LinkDB
All DBs
Position
1935450..1937795
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AA seq
781 aa
AA seq
DB search
MKKFDPSAITDLLNASPEPLTKRQIAEALNIRGEQERVELKDALRMLEDDGIIIKQPGQA
YAIPEALPAVAIIEVTDIDLDGDTLARPVDWSEEYQGPAPRIEITPDMNKGHPALTPGDR
ALVKLSRVAPNMYEARVIRQLDTERGRVMGLVVRTKSGFILRPANKKAKFDFDIAQKDLN
GADENDLVVAEIQPSRGVRNGKVRVKEIIGSRNDPKAISLLALNEAGLRETFPDAVIRET
EKMTVPTLDKRDDLRRWPLVTIDGIDARDFDDAVFAEKDTENGGYHLIVAIADVAFYVRP
DSNLDREAYRRGNSTYFPDRVVPMLPEALSNDLCSLRPNEDRACMAVHMWIDDHGNLQKY
KFVRGLMRSKARLIYEQVQAARDGTPDAITGPLMDEVINPLYEVYEVLQKSRNERGALDL
DIPERKIVLNDKNEMTGVAVRARYDSHKLIEEFMILANVAAAMALEARKAPCMYRIHDRP
SPEKIDAAADFIDSFGLSLPRGQVIRPAQLNGILRQADKLPYGHLVHQMILRSQAQAIYH
PDNIGHFGLALEKYAHFTSPIRRYADLVVHRSLIRAWNLGPGGLSDEEVVQMEEIADHIS
QTERTSAEAERNAVDRFAATFLSTQVGAQFSGRISGVTRFGLFVTLDESGADGIVPIRTL
PNDFYDHVEDQHALIGQRSGRIYRLGASIAVQLKEADPLTGGTVFAVIGTEGADIPGLTF
KKTLHNSGKPSKKKPFHRGGPRKGSGKPSHRKGQGGGFRGASDGQPGKKPGGPKRGGKKR
R
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaatttgacccctctgccattaccgacctcctcaacgccagtcccgagccgctg
accaagcgccagattgccgaagccctgaacatccgcggcgagcaggaacgcgtcgaatta
aaagacgcgctgcgcatgctggaagatgacggcatcatcatcaaacaaccgggccaagcc
tacgccattcccgaagccctgcccgccgtggccattatcgaagtcaccgacatcgatctg
gacggtgacacgctggcccgcccggtggattggagcgaggaatatcaaggccctgccccg
cgcattgaaatcacgcctgacatgaacaagggccacccggcccttacccccggcgatcgc
gcgctggtcaaactgagccgcgttgcgccgaacatgtacgaagcccgcgtgatccgccag
ttggataccgaacgcggccgcgtcatgggtttggtcgtgcgcacgaaaagcggctttatc
ctgcgccccgcgaacaagaaggccaagtttgatttcgacatcgcgcagaaggatttgaac
ggcgcggatgaaaacgatctggtcgtcgccgaaatccagcccagccgcggcgtgcgcaac
ggcaaggtgcgcgtgaaggaaattattggatcgcgcaatgatccaaaggcgatcagcctg
ctggcgttgaacgaagccggcttgcgcgaaacattccccgacgcggtcatccgcgaaacg
gaaaaaatgacggtgccgacattggacaagcgcgatgatttgcgccgctggccgctggtc
accattgacggcattgatgcgcgcgatttcgatgacgcggtctttgccgaaaaagatacc
gaaaatggcgggtaccatttgatcgtcgccattgctgacgtcgccttctatgtccgcccg
gacagcaatctggaccgcgaagcctatcgtcgcggcaactccacctatttccccgaccgc
gtcgtaccgatgctgccggaagcgttgtccaacgatctctgctcgctgcgcccgaacgaa
gaccgcgcctgcatggccgtgcatatgtggatcgacgatcacggcaatctgcagaaatac
aaattcgtgcgcggattgatgcgatccaaggctcgcctgatttacgaacaggtccaagcc
gcccgcgatggcacacctgatgccatcaccggaccgttgatggatgaggtcatcaacccg
ctgtatgaagtgtatgaagtcctgcaaaaatcgcgcaatgagcgcggcgcgctggatctg
gatattcccgaacgcaaaatcgttttgaatgataaaaacgaaatgaccggcgtggccgtg
cgggcgcgctacgattcccacaaactgatcgaagaatttatgattctggccaacgtggcc
gcggccatggcgctggaggcccgtaaagccccgtgcatgtaccgcattcacgatcgcccc
agcccggagaagattgacgccgccgccgattttatcgacagctttggcctgtctttgccg
cgtgggcaagtcattcgcccggcgcaattgaacggcattttgcgtcaggccgataaactg
ccctacggccatctggtgcaccagatgatcctgcggtcccaggcgcaggctatttatcac
ccggacaatatcgggcactttggtctggcgctggaaaaatacgcgcacttcacatccccc
attcgccgttatgccgatttggtcgtgcaccgcagtttgatccgcgcgtggaacctcggc
cccggcggattgagcgatgaagaagtcgtgcagatggaagaaatcgccgaccacatttcc
caaaccgaacgcacatcggcggaagccgagcgcaatgcggtggaccgctttgccgccacc
ttcttgtccacccaagtgggggcgcagttttcggggcggatcagcggcgtgacccgcttt
ggcctgttcgtcacgctggatgaaagcggcgcggacgggattgtgcccatccgcaccctg
cccaacgatttctatgaccatgtcgaagaccagcacgccctgatcgggcagcgttcgggc
cggatttaccgccttggcgcctctattgcggtgcagcttaaagaagccgaccccctgacc
ggagggacagttttcgcggttattggcaccgaaggggccgatattcccgggttaaccttc
aagaaaactttgcataattctggaaaaccctctaagaagaaaccattccatagaggcggc
ccgcgcaaggggtccggcaagccaagccaccgcaaagggcaaggcggcggatttcggggt
gcttcggatggtcagccgggcaaaaagccgggcggaccaaaacgtggagggaaaaagcgc
cgttag
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