Micavibrio aeruginosavorus ARL-13: MICA_1953
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Entry
MICA_1953 CDS
T01630
Name
(GenBank) RNB domain protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mai
Micavibrio aeruginosavorus ARL-13
Pathway
mai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICA_1953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mai03019
]
MICA_1953
03016 Transfer RNA biogenesis [BR:
mai03016
]
MICA_1953
Enzymes [BR:
mai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MICA_1953
Messenger RNA biogenesis [BR:
mai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MICA_1953
Transfer RNA biogenesis [BR:
mai03016
]
Prokaryotic type
tRNA degradation factors
MICA_1953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
AEP10262
UniProt:
G2KNL7
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All DBs
Position
1937861..1939612
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AA seq
583 aa
AA seq
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MAKKKQTNNNHAHNNGRKNSNGNGGAPRGRNISPTAQSIKVSIAATNDQTPTDPDAFKAS
TITTAVLNSFKIKEPHDAAAVAEATTVVQTVDSSAVRKDLTHIPFVTIDGITSRDFDDAV
HAEPDTAADNVGGYLVNVAIADVAWYVRPGSALDDQALSRGFSVYPPDRAVHMLPNELSE
QACSLKPNVDRYALVAHIRVNKDGDVLDSSYSRAIIRSRARLTYEGVDEFLAGELSGVPS
VADTLIPPLHEVYEILNQNAMNRGKLKFSFGKMSSTIGADGFVNGFVKDDNREGSRELIE
ELMCLANCVVARDLLAHGQYPVMTRVHEEPAEDQVTKAKALLSAAGITKRHGEEWTLADI
NKMLDDPAYADKHDKIRSAAMKLINRGEYAINETGHFGLALKTYCHFTSPIRRYPDLQVH
RALISAFNLGEGGMAKDVDLKSMFNQAAAINALDNQADAVYRIATDRYALAFLHKTGPVH
QATLKDIKKDGALVLAFENTPLKLTVDKSFVPADDFRINMKKRQLVDDMGTVIGINDNVP
VRILSCNPLTGTFSIAMDGYTYPKGGTLQPMAQKDRKQAPKNG
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
gtggctaagaaaaaacaaaccaataacaaccacgcgcataacaacggacgcaaaaacagc
aacggtaatggcggcgcaccgcggggccggaatatttccccgaccgcgcaatcgatcaaa
gtcagcattgccgccaccaacgaccaaaccccaaccgaccccgatgcgttcaaagcatcc
accattacaacggcggttctgaacagttttaaaatcaaggagccgcatgacgccgccgct
gtggccgaggccacaaccgtggttcaaaccgttgacagttccgccgtgcgcaaggatctg
acccatattccgttcgtgacgattgatggcattacatcacgcgatttcgatgatgccgtt
catgccgaacccgacaccgccgccgataatgttggcggatatctggtcaatgtcgcgatt
gccgatgtcgcctggtatgtccgcccgggcagtgcgctggacgatcaggctttatcccgc
ggtttctcggtctatccgccggatcgtgcggtgcatatgctgccgaatgaattgtctgaa
caggcctgctcgctgaaaccgaatgttgaccgctatgcgctggttgcgcatatccgcgtg
aacaaggatggcgatgtactggacagttcctatagccgcgccattatccgttcccgcgcg
cgcctgacctatgaaggcgtggatgaatttctggccggtgaattaagcggcgttccatcc
gttgccgatacgctgatcccgcccttgcacgaagtttatgaaatcctgaaccagaatgcg
atgaaccgtggcaagctgaaattcagctttggcaaaatgtccagcacgattggcgcggat
ggcttcgtcaacggcttcgtgaaggacgacaaccgtgaaggttcgcgtgagctgatcgag
gaattaatgtgcctggccaactgtgtcgtggcgcgggacttgctggcccacggccagtac
ccggttatgacccgtgtgcacgaagaaccggccgaagaccaagtgacgaaagccaaagcc
ctgctctccgctgctggcatcaccaaacgccatggcgaagaatggacattggccgatatc
aacaaaatgctggatgatccggcctatgccgacaagcatgataaaatccgctcggccgcg
atgaagctgatcaaccgtggcgaatatgccattaacgaaacgggccactttggtctggcg
ttgaaaacatattgccacttcacctcgcccatccgccgttacccggatttgcaggttcac
cgcgcactgatctctgcctttaatctgggcgaaggcggcatggccaaggatgttgatttg
aaatccatgttcaatcaggccgccgcgatcaatgcactggataaccaggccgatgccgtg
tatcgcatcgccaccgaccgctacgccctggccttcctgcataaaacaggcccggtgcat
caggccacgctgaaggacatcaaaaaggatggtgcgctggttctggcgtttgaaaatacg
cccctgaaactgaccgtcgacaaatcctttgtcccggcggatgatttccgcatcaatatg
aagaaacgccagctggtggacgatatgggcacggtgatcgggatcaacgacaatgtgccg
gtgcgcattttgtcctgtaacccgctgaccggaaccttctccatcgccatggacgggtat
acctaccccaaaggcgggacccttcagcccatggcccaaaaggaccggaaacaggccccc
aaaaacgggtaa
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