Micavibrio aeruginosavorus ARL-13: MICA_356
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Entry
MICA_356 CDS
T01630
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mai
Micavibrio aeruginosavorus ARL-13
Pathway
mai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICA_356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mai03019
]
MICA_356
03009 Ribosome biogenesis [BR:
mai03009
]
MICA_356
Enzymes [BR:
mai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MICA_356
Messenger RNA biogenesis [BR:
mai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MICA_356
Ribosome biogenesis [BR:
mai03009
]
Prokaryotic type
rRNA processing factors
MICA_356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
THOC2_N
Motif
Other DBs
NCBI-ProteinID:
AEP08701
UniProt:
G2KR49
LinkDB
All DBs
Position
380550..383483
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AA seq
977 aa
AA seq
DB search
MAKRMLIDATHAEETRVAVVDGNRLVEFDYESKVRKQLKGSIFLAKVTRVEPSLQAAFVN
FGGNRHGFLPFTEIHPDYYRIPIADREALLAEQQAELDALAAEEEAEEAEALARAAAQQA
QSDGQPAIDMNSDEDAEQDQAESDEEDDEDEEDDEEEDEIVEELGGENRAVEMIDEESED
DDADDENSNEPVSVQLIPVPIPVDGVFADEQDQDDEAGDVDGNDGVRDDVEDDGEMAASE
GEDQADGEEIPEGASEEGGEGEGNNGRRRGRGNDRGRGRGRGGRDRGRGRGGRHMAASSR
RVEMLGGDGVDGDRPVRPSLRKNYKIQEVIKRGQIMLIQVSKEERGNKGAAVTTYLSLPG
RYCVLMPNSPRGGGVSRKIANFEERRRMKEILAELNVPEGMSVIMRTAGMSRTKQEIKRD
LDYLLRLWNDIRDLTLQSSAPAQIHEEGNLVRRAVRDLYSRDIEEIHVAGEDGYKIARDF
MKVMMPSHAKRVVHYQDEQIPLFHRYQVESQIRDMGSSTAQLKSGGYLVINPTEALVSVD
VNSGRATKERHIEETALKTNLEAADEVARQLRLRDLGGLVVIDFIDMEDRRNNAKVERRL
KEALSTDRARIQMGRISSFGLLEMSRQRLNPSLTEAQFEKCHECGGAGHVRTEDSASILA
LRALEEEGIRGRAATVHLTVPPRVALYILNHKRAMMEDIERRYGFTILIRVDESLTASDF
KIESIKAQPRDDDEEGPAPRRRPEQRAPIARSVVEDDQDESGEDEDQSSDTDAESDGEAG
EVDAGAPREEGEDGQRRNRRRRGRRGGRNRNRRDRDPNGGEDRPTDEDGEIDGNRAEADF
ASDDDAQPRENHSREHAPREGAREGGREGQRGRNRNRGGRNRGGRDNRGNRDDQPMNQQG
QERNDNVDHGYAVNIGDVPAPVSTPAPARERTPAFEMAQAPAQERTQESTPPVAREYERV
NEEPSEKKKGWWNRLME
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggctaaacgtatgttaattgacgcaacccacgcggaagaaacccgggttgcggtggtc
gatggaaaccgtctggttgaattcgactatgaaagtaaagtccgcaaacagcttaaaggc
tctatttttctggccaaggtgacacgggttgaaccctcgctgcaggccgcgttcgtgaat
tttggcggcaaccgccacggcttcctgcccttcacggaaattcaccccgactattaccgc
attccaatcgccgaccgcgaagccctgctggccgaacaacaggccgagctggatgcactg
gctgccgaagaagaagcggaagaagccgaagctctggcccgtgccgccgcgcaacaggcc
cagtctgacggtcagcccgccatcgacatgaatagcgatgaagacgctgaacaggatcaa
gcggagtccgatgaagaggacgacgaggatgaggaagacgacgaagaggaagacgaaatc
gttgaggaactgggtggtgaaaaccgcgcagttgaaatgatcgacgaagaatctgaagac
gacgacgcagatgatgaaaacagcaacgaacccgtatcggttcagctgattcccgttcca
atcccggtcgatggcgtgtttgccgatgagcaggatcaggacgacgaagccggcgatgtt
gacggcaatgatggcgtgcgtgacgatgtcgaggatgacggcgaaatggccgcgtccgaa
ggcgaagaccaggccgatggagaagaaatccccgaaggtgcctccgaagaagggggcgag
ggcgaaggtaacaatggccgccgtcggggccgtggcaatgatcgtggccgtggccgcggt
cgtggtggccgtgatcgcggtcgtggccgcgggggtcgccatatggcggccagcagccgc
cgcgtagaaatgctgggcggtgacggcgtggacggtgatcgtccggtgcgcccgtccctg
cgcaaaaactacaagattcaggaagtgatcaaacgcggccagatcatgctgatccaggtc
agcaaggaagagcgcggcaacaaaggcgcggccgtgacgacctatctgtctctgccgggc
cgttactgtgttctgatgccgaacagcccgcgtggcggtggcgtcagccgcaagattgca
aacttcgaagaacgtcgccggatgaaagaaatcctcgccgagctgaacgtgccggaaggc
atgtccgtgattatgcggaccgccggtatgtctcgcacgaaacaggaaatcaaacgcgat
ctcgattatctgctgcgtctgtggaacgatattcgtgacctgaccctgcaatcatcggcc
ccggcccagatccacgaagaaggcaacctggttcgccgcgccgtgcgtgacctgtacagc
cgcgacatcgaagaaattcatgttgctggtgaagacggttacaaaatcgcccgcgacttc
atgaaagtcatgatgccgtcccacgccaaacgcgtggtgcattatcaggatgaacaaatc
ccgctgttccatcgttatcaggtcgaaagccagatccgcgatatgggcagctcgaccgcg
caattgaaatccggtggttatctggtcatcaacccgaccgaagcgttggtgtctgtcgac
gtcaactccggtcgtgcgaccaaggagcgccatatcgaagaaacggcattgaaaaccaac
ctggaggccgcggatgaagtggcccgccaattgcgcctgcgcgatctgggtggtctggtt
gtcatcgactttatcgatatggaagaccgccgcaacaatgcaaaggtcgaacgccgtttg
aaagaggcgctgtctaccgaccgcgcccgcattcagatgggccgtatttccagctttggt
ttgctggaaatgtcacgccagcgtctgaaccccagcctgaccgaagcgcagtttgagaaa
tgccatgaatgcggtggtgccggacacgtccggaccgaagattccgcctctattctggcc
ctgcgtgcgttggaagaagagggcattcgtggccgcgccgcgacggtgcacctgaccgtt
ccgccgcgtgttgcgttgtacatcctgaaccacaaacgcgcgatgatggaagatattgag
cgtcgttatggtttcaccattctgatccgtgtcgatgaatcgctgaccgcgtccgatttc
aagattgaatcgatcaaggcccagccgcgtgatgacgatgaagaaggcccggccccgcgc
cgccgcccggaacaacgcgcgccgatagcccgaagcgttgttgaagatgatcaggacgaa
agcggcgaagacgaagatcaatcgtccgacactgatgcagagtccgatggtgaagctggt
gaagtcgatgctggtgcgccgcgtgaagagggtgaagacggtcaacgccgtaatcgccgc
cgccgtggccgccgtggtggccgcaaccgcaaccgtcgtgaccgtgatccgaacgggggc
gaggatcgcccgaccgatgaagatggtgagattgatggcaaccgtgccgaagccgatttc
gccagcgacgatgatgctcagccgcgtgaaaatcattcgcgtgagcatgcgccccgtgaa
ggtgcccgtgaaggtggtcgcgaaggtcagcgaggtcgtaaccgcaatcgcggtggtcgt
aaccgcggcggtcgtgacaatcgcggcaaccgtgatgatcagcccatgaaccaacagggg
caggaacgcaacgacaatgttgatcacggctatgccgtgaacattggtgacgttccggct
cctgtgtctacgcctgcacctgcgcgcgaacgtacaccggcatttgaaatggctcaggct
cccgcccaagagcggacgcaggagtcgacgccgccggtcgcgcgtgagtatgagcgtgtg
aacgaagagccctcggaaaagaaaaaaggctggtggaatcgtttgatggagtaa
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