Monopterus albus (swamp eel): 109952113
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Entry
109952113 CDS
T05607
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
malb
Monopterus albus (swamp eel)
Pathway
malb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
malb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109952113 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
malb03019
]
109952113 (patl1)
Messenger RNA biogenesis [BR:
malb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109952113 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
109952113 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
DUF3849
Motif
Other DBs
NCBI-GeneID:
109952113
NCBI-ProteinID:
XP_020442644
LinkDB
All DBs
Position
Unknown
AA seq
824 aa
AA seq
DB search
MFRFHQSQDEDCTLEEEDEGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDERDG
LGAGLVMGGESDLGGAEDSSSTSLPSSADHLPLPSALASLKFSSSSGLPPPDVEDRGGDG
DLAESLARLILEADPAIAGVGAAERPGPAASSSGSGPSALQGRDRPRGLPQPSSSQHPPE
PHQHPQQQLPPRPSTSGIPPGPPPSSSMINYQQQEHMLHRGAAPMGQMNSHSIWENSIGF
GPVSVTPGLVTHMEDSPLMSIIKEVGLPKRPPQGRNDEGRDLSERVPPPRSSSPVIGSPP
VRVVPIGTPPKQPMSHALNHQIHHPTAVHVRAPVQHRYPSPFPERLSPNTLLNIANSPLC
RGPFPPGVGPVLSQIQRAQMLNSQVAGFPRSGPAPSLLLGGGGFRPFFGGPPPPHGHRMG
PPPPHGLPNQTPPIRHTPTTKCGCPIFSPPACRDRSRTGGDRCSRDPYSNLMTQKEKEWV
TKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERERDSSKKEHTTKLITPQVAKVEHTYRP
VQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQILYTVEKMYSLLLE
VQDFEKRFVLAPEEDREALLEQHKTNTMQLCNSLQEKEWDDRVSDEQCVMIMSVRKGKRL
IARLLPFLPASQAAAVVMAIARNLPALVKKDKQDQVLCWLVEPVSAVIQSLSSSTLTDLL
QELQGNEGQLAKVLHNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTRELL
TVPSSSLSPPLFTPPNLLSLFSRYVDRQSLVQLQDKLQISALSR
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgtttcggtttcaccagtctcaggatgaagactgtacattggaggaggaagatgaggga
ttggtagaagaggaagatgaaattgaccagttcaacgatgacacctttggagctggggcc
attgatgacgactggcaggaagaacataaacgccttgctgagctcgacgagcgagatggg
ctaggagcggggctggtgatgggaggagaatcagatttaggaggagctgaggactcttcc
tctaccagtctcccttcctctgcggaccatctcccactcccatccgccctcgcttcactc
aaattctcatcttcgtctggactgcctccaccagatgtggaggatcgaggaggagatggt
gacttggctgagtccctggccagactcatcctggaggctgacccagctattgctggggtc
ggtgcagctgagaggccaggtccagctgccagctcttcaggatccggcccgtctgctctg
caggggcgtgatcgacccagaggtctgccccagccatcctccagccagcatccccctgaa
ccacaccagcatccccagcaacagctgcctcctaggccctccacttcaggcattcctcct
ggccctcctccctcctcctccatgatcaactaccaacagcaggaacacatgttacacaga
ggggcagctcctatgggccagatgaactctcacagcatctgggagaacagtattggtttt
gggccggttagtgtcacccccggactggttacacacatggaggatagtccactaatgtct
ataatcaaagaggtgggccttcctaagcgacctcctcagggtaggaatgatgaaggcaga
gatttgtcagagagggtcccacctccacgctcttcttcccctgtgattggctcccctcca
gtcagggtagtgcctattggaaccccgcccaaacaacctatgagccatgccctgaatcat
cagatccaccatcctacggcggttcacgtgagagccccagtccagcacagatacccttct
ccttttcctgaacgtctgtcaccaaacaccctcctcaatatagctaattctccactgtgt
cgtggtccattccctcctggtgttggtccagttctgtctcagattcaaagggcccagatg
ctcaactctcaggtggcaggttttccccgcagtggtccagcaccttctttgctactaggt
ggtggtggtttcaggccattctttggtggcccccctcctccacatggtcaccgaatgggc
ccaccgccccctcatggcctccccaaccaaacgccacccattcggcacacccctaccact
aaatgtggctgccctattttctctccacctgcttgtagagaccgtagcaggactggaggg
gaccgatgcagcagggacccctatagtaacctaatgacacagaaggagaaggaatgggta
accaagatccaaatgatgcagctccaaagtactgacccttacctggatgactactactat
cagaactactatgaaaagatggagaaacgtcaggaaagagaaagagacagcagcaaaaag
gaacacaccaccaaactcatcactccacaggtcgccaaagtagaacacacctacagacca
gttcagtttgctggttctttggggaaactgacagtctccagcgtcaacaacccccgcaag
atgattgatgctgtggtgacaactcgaacagatgacgaggagaaaagagagaagcaggtt
tggaataagaggcgacagatcctctacactgtggagaagatgtacagtttgctgctggag
gttcaagactttgagaagcgttttgtcctggcaccagaggaagacagagaggctctgctg
gagcagcataaaaccaacaccatgcagctgtgcaactctctgcaggagaaggagtgggat
gacagagtgagtgatgagcagtgtgtgatgatcatgtccgtgaggaagggcaagcggctg
attgccaggcttctcccctttcttcccgcatcccaggctgccgcagttgtcatggcaatt
gcccgcaaccttcctgccctggtcaagaaggacaagcaggaccaggtgctgtgctggtta
gtggagccagtgtctgcagtgatccagtcgttgtcgagctccacactcacagacttgctc
caggagctgcaaggcaacgagggccaactggccaaagtactgcacaacaagtttggtgtg
acactgttgtatctgatcctgagtgagggagagaggatgcagagctccgaccctaattgt
caactcatggacgacaatcgatggaccgagttagtgttttcggtgacgagggagctgctc
accgttccctcttcgtccctctctcctcccctcttcacccctcccaacctgctctccctc
ttctcccgctacgtcgatcgacaaagcctcgtgcagttacaggacaagctacagatctct
gctttgtccaggtag
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