Monopterus albus (swamp eel): 109962342
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Entry
109962342 CDS
T05607
Symbol
cpsf2
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
malb
Monopterus albus (swamp eel)
Pathway
malb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
malb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109962342 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
malb03019
]
109962342 (cpsf2)
Messenger RNA biogenesis [BR:
malb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109962342 (cpsf2)
U7-dependent histone pre-mRNA processing factors
109962342 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
109962342
NCBI-ProteinID:
XP_020459646
LinkDB
All DBs
Position
Unknown
AA seq
787 aa
AA seq
DB search
MTSIIKLTALSGVQEESALCYLLQVDEFRFLLDCGWDENFSVDVIDAMKRYVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD
CAFDKIQQLKYSQIVNLKGKGHGLSIMPLPAGHMIGGTIWKIVKDGEDEIVYAVDFNHKR
EIHLNGCSLESISRPSLLITDSFNATYVQTRRKQRDEQLLTNVMDTLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGAYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDRRN
NPFQFRHLNLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIHWCQNAKNAIILTYRTT
PGTLARYLIDNPGEKMLDLEVRKRVKLEGKDLEEYLEKEKIKKEAAKKLEQAKEVDVDSS
DESDMDDDLDQPAAVKSKHHDLMMKGEGNRKGSFFKQAKKSYPMXXXXXXXXXXXEYGEI
IRLEEFLVPELQATEEEKSKLEAGLTNGDEPMDQDLSVVPTKCISSLENLEIRARVAYID
YEGRSDGDSIKKIINQMKPRQLVIVHGSPEASLDLAESCKAFSKDIKVYTPKLQETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVMLEEGVKEDVEDSD
AVMDTSPDLDIDNDATAVAAQRAIKNLFGEDEKEVSEESDVIPTLEPLPPHEIPGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCDDYYKIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcaattatcaagctgactgccttgtcaggggttcaggaggagtcggccctctgt
tacctgctgcaggtggatgaattccgcttcctcctggactgtggatgggatgagaacttc
tcagtggacgtcattgatgctatgaaacgatatgttcatcaagtcgatgctgtgctcctc
tcccaccctgatcccatacacctgggagccctgccatacgctgtgggcaaactgggttta
aactgtactatctatgcaacaattcctgtctacaagatgggtcagatgttcatgtatgat
ctttatcagtctcgaaacaacagtgaagatttcactctgttcacccttgatgatgtggac
tgtgcttttgataaaatccagcagctgaaatactctcagattgtaaacctaaaggggaaa
ggacatggtctctccatcatgccgcttccagctggtcacatgattggagggactatttgg
aaaattgttaaggacggagaggatgagatcgtttacgctgtggacttcaatcacaagaga
gagatccacctgaatgggtgttcactggagagcatcagtcgtccttctttactcattaca
gactctttcaatgctacatatgtacagacgcgtcgcaaacaaagggatgagcagctcctt
accaatgtgatggacacccttcgtggtgacggtaatgtccttattgctgtggacacagcc
ggccgtgtgctggagctggcacagctcctggatcagatttggaggacaaaggatgctggg
ctaggagcttacccactagctctgctgaacaatgtcagctacaatgtagtagaattctca
aagtcccaggtggagtggatgagtgacaagctaatgaggtgttttgaggacaggagaaac
aaccccttccagtttcgtcacttgaacctgtgccacagtctggcagacctggcccgggtg
ccgagcccaaaggtggtgctttgcagccagccagacctcgagtctggcttttctcgagaa
ctcttcatccattggtgtcaaaatgctaaaaacgctatcatcttgacctaccgcaccaca
cctgggaccctggcccgctacctcattgacaaccccggagaaaagatgctagatctggag
gtgaggaaaagagtgaagcttgaaggcaaggacctagaggaatacctcgaaaaggagaaa
ataaaaaaagaagcagctaaaaaacttgaacaagcaaaagaggtggatgtggactccagt
gatgagagcgatatggatgacgatctggatcagccagctgcagtaaagagcaaacaccac
gacttgatgatgaagggtgaggggaaccgcaaaggcagtttcttcaaacaagccaaaaaa
tcttacccaatgntnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgagtatggggaaatc
atcaggctagaagagtttctggttcctgaactgcaggccacagaggaggagaaaagcaaa
ctggaagctgggctgaccaacggtgatgagcccatggaccaggatctttctgttgttcct
accaaatgcatctctagtttggaaaaccttgaaattagagcgagggtcgcttacatagac
tatgaagggcgctctgatggcgactccataaagaaaattattaaccagatgaagcccaga
cagctggtgatcgttcacgggtcaccagaagccagcctggacctggccgagtcctgcaag
gctttcagcaaagacatcaaagtctatacgcccaaactgcaggagactgttgacgccacc
agtgagacacacatctaccaggtgcggttgaaagactcgttggtgagctctctgcagttc
tgcaaagccaaagacacggagctcgcatggattgatggcgtgctggacatgcgtgtggtg
aaggtggacaccggggtgatgctggaggagggcgtgaaagaggacgttgaggatagcgac
gcggtcatggacacctctcccgatcttgacatcgataacgatgccacggcagtggcagca
cagcgtgcaatcaaaaacctgtttggagaggatgagaaggaggtgtctgaggagagtgat
gtcattcccacactggagccgctgcccccacacgagattcctgggcatcagtcggtgttc
atcaacgaacctcgcctgtctgacttcaagcaggtcctgctgagagaaggcatccaggcc
gagtttgtgggaggcgtgctcgtatgcaacaacatggtggctgtccgcaggacggaggcc
ggacgcattgggctcgaaggctgcctgtgtgatgactactataagatccgagagctgctg
tatcagcagtacgctgtggtatag
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