Monopterus albus (swamp eel): 109965890
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Entry
109965890 CDS
T05607
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
malb
Monopterus albus (swamp eel)
Pathway
malb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
malb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109965890 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
malb03019
]
109965890 (xab2)
03041 Spliceosome [BR:
malb03041
]
109965890 (xab2)
Messenger RNA biogenesis [BR:
malb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109965890 (xab2)
Spliceosome [BR:
malb03041
]
Complex B
Other components
Prp19-related factors
109965890 (xab2)
Complex C
109965890 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
NRDE-2
TPR_1
Tcf25
Motif
Other DBs
NCBI-GeneID:
109965890
NCBI-ProteinID:
XP_020465926
UniProt:
A0A3Q3JYU5
LinkDB
All DBs
Position
Unknown
AA seq
848 aa
AA seq
DB search
MSSLNGKPDVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKSTLNMIYERALKELP
GSYKLWYNYLRERRKQIKGKCITEPTYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRRTFDRALRALPVTQHPRVWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAALRLAAVVNDEGFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQDVDDDIDLELRLSRFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHCLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIVINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATRAVETEERHQMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCQRFADMECKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKLLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELTKQANPDEIDIDDDDDEDDDQGPDEVQLEQKSVPAA
VFGGLKDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgttaaacggaaaaccggatgttatattcgaggacgatgacctgccttatgaa
gaggagattatcaggaacccatattcagtcaagtgctggatgcgttacatcgaattcaag
cagaacggacccaaatccaccctcaacatgatatatgagcgggctctcaaagagctgcct
ggcagttataaattgtggtacaattatctgagggagaggcggaaacaaatcaaggggaaa
tgcatcactgaaccaacctatgaagaagtcaataattgccatgaaagggcgctggtgttc
atgcataagatgcctagaatatggcttgattactgccagttccttgtgtctcagtgcaag
atcacaagaagtcggcgaacatttgaccgagcactcagggctcttcctgttactcagcac
ccacgcgtctggcctctgtatcttcgctttgttcgtaacctgcccttgcctgagacagct
atccgggtataccgaaggtaccttaagctttctccagagaatgcagaggaatacatagac
tacttgcgctctgttggccggttggatgaagcagctttgcgactagcagctgttgtcaat
gatgaaggctttgtatccaaagagggcaagtctaactatcaattatggcatgagctatgc
gacctgatctcccagaaccctgataaggtgacctctctgaatgtaggagccatcatccga
ggaggcctcactcgcttcacagaccaacttgggaaactttggtgctctttagctgactat
tacatcaggagcggccactttgagaaagcccgtgatgtgtatgaagaggccatccttaca
gtggtaacagtaagggatttcacacaagtgtttgacagttatgcccagtttgaggagagc
atgattgctgccaaaatggaaaccactgctgagatgggacaagatgtagatgatgacata
gacttggagcttagactgtcccgctttgagcagttgatagcccggcggcccctcctcttg
aacagtgttctactgaggcagaatcctcataatgtccatgagtggcacaaacgggtaaaa
ctgtatgagggcaatccacggcagatcatcaacacatacactgaagcagtgcagactgtg
gatccaatgaaggccacagggaagcctcactgtctgtgggtctcctttgctaaattctat
gaggagaatgagcaactggatgatgctaggacaatctttgaaaaggctaccaaggtgaac
tacaagcaggtagatgaccttgctgctgtgtggtgtgaatatggagagatggagcttcgc
catgagaattatgaacaggcactgcgcatactgaggaaagctacggccatcccatccaaa
aaagcggagtactttgatgcatctgagcctgtccagaacagagtgtacaagtccttgaag
gtctggtctatgctggcagacttggaggagagtcttggcactttccagtctacaaaagca
gtgtatgaccgtattattgacctccgcattgccacgccacagattgtcatcaattatgcc
atgtttcttgaagagcacaactactttgaagaaagcttcaaggcgtatgagcgcggtatt
gctctcttcaggtggccaaatgtgtatgacatctggaacacttaccttaccaagttcatt
gatcgttatgggggcaagaagttggagagagctagagatttatttgaacaagcgctggat
ggctgccctgccaagtttgccaagaccatttaccttttgtatgccaaattggaggaggag
tatggattggcacgacatgccatggctgtctatgaaagagcaacacgggcagtcgaaact
gaggagagacatcaaatgtttaatatctatatcaagagagcagctgaaatttatggagtt
acatataccagagcaatttaccagaaggctattgaggtccttcctgatgagcatgcgagg
gacatgtgtcagcggtttgcagacatggagtgtaaactgggtgagattgatcgggccaga
gcaatctactcctactgctcccagatctgtgacccaagggtgacagctaacttctggcag
acctggaaagaatttgagatccgccacggaaacgaggacaccattagagagatgcttagg
atcaaacgcagtgtccaagccacctacaacacccaggtcaattttatgtcctctcagatg
ctgaaggccacaacaagctccacaggcactgtgtccgatcttgctccaggtcagatggga
attgatgacatgaagttgttggaacagaaagcacagcagcttgctgcagaagccgagcag
gacaaacccaagcccaaagagaagattctctttgtcaggagtgacacctctcgcagtgaa
ttggctgagcttaccaaacaagctaatcctgatgagatcgacattgatgatgatgacgat
gaagatgatgaccaaggaccggatgaggtgcagcttgaacagaagagcgtacctgcagct
gtgtttggagggcttaaagatgactga
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integrated database retrieval system
