Monopterus albus (swamp eel): 109966086
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Entry
109966086 CDS
T05607
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
malb
Monopterus albus (swamp eel)
Pathway
malb04510
Focal adhesion
malb04512
ECM-receptor interaction
malb04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
malb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109966086
04518 Integrin signaling
109966086
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109966086
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
malb00536
]
109966086
Glycosaminoglycan binding proteins [BR:
malb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109966086
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
109966086
NCBI-ProteinID:
XP_020466343
LinkDB
All DBs
Position
Unknown
AA seq
1492 aa
AA seq
DB search
MFSFVDSKTVLLLLASQVVLLSVVRCQEEDDQEAGGCIWDGQQYNDKDVWKPVLCRICVC
DSGAVLCDEIICEEIKECPNPIIPSGECCPICPADASAPIETVGAKGQKGEPGEIADVVG
PRGPPGPMGPPGEQGPRGEAGAKGDKGNIGPRGRDGEPGIPGNPGPAGPPGPPGLGGNFA
AQMSQGFDEKAGGASMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGAHGEAGEAGAAGPLG
PRGPPGPPGKPGSDGESGKPGKPGERGPAGPQGARGFPGTPGLPGLKGHRGHPGLDGAKG
EYGAAGAKGEAGTPGENGAPGPMGPRGLPGERGRPGPAGAAGARGNDGLSGPAGPPGPVG
PAGAPGFPGSPGAKGEAGPTGSRGAEGPQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPAGPLG
PPGPTGEEGKRGARGEPGAAGPVGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG
PKGATGDPGRTGESGLPGARGLTGRPGDAGPQGKVGPTGVPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKPGEKGLVGRPGLRGLSGKDGETGAAGPPGPAGPAGERGEQGQPG
PSGFQGLPGPTGAPGEAGKPGDQGVPGEAGAPGVVGPRGERGFPGERGGAGAQGLQGPRG
LPGTPGTDGPKGAIGPAGAPGLQGPPGLQGMPGERGAGGIPGPKGDRGDNGQKGPEGAPG
KDGARGLTGPIGPPGPAGPNGAKGETGPNGPSGAPGVRGAPGDRGEIGPPGPAGFAGPPG
ADGQPGVKGESGEAGQKGEAGALGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPG
AAGRVGPPGPNGNPGPVGPPGAAGKDGPKGARGDAGLPGRQGDTGLRGPPGLQGEKGETG
KDGERGGDGPPGPQGLAGTRGIVGLPGQRGERGFPGLSGPSGEPGKQGAPGSAGERGPPG
PVGPPGLTGPAGEPGREGTSGSDGPPGRDGAVGVKGERGNTGPAGAPGAPGAPGSPGPVG
PLGKQGDRGESGAQGPAGPAGPAGARGMAGPQGPRGDKGETGEAGERGQKGHRGFTGLQG
LPGPPGPAGDSGAAGPAGPSGAKGPPGPVGPAGKDGSNGQPGPIGPPGPRGRSGETGSAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKGPDPLRYMRADEASTSLRQHDVEVDSTLK
SLNSQIENLRSPDGSQKNPARTCRDLKLFTPDXPTSLTSPGDYWVDPNIGSMADAMKVYC
NMETGETCVYPRIAKVPKKNWWSSKSKDRKHIWFGETMNGGFHFSYAQDGPAANTASIQL
TFLRLLSTEASQNLTYHCKNSIAYMDQTTGNLKKALLLQGSNDVEIRAEGNSRFTYSVLE
DGCKKHTGHWGKTVIEYKTQKTSRLPIVDIAPLDIGGADQEFGVDVGAVCFL
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaagactgttctgctacttctagcatcccaagttgtttta
ttatctgtggtcagatgtcaggaagaggatgaccaggaagcaggtggctgcatctgggac
ggacagcagtataatgataaggatgtgtggaagccagtgctgtgtcgtatctgtgtatgc
gacagcggagcggttctgtgtgatgagataatctgcgaggagatcaaagagtgccccaac
cctatcatcccatctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt
gagacagttggtgctaagggccagaaaggcgaaccaggagagattgcagatgttgtagga
ccaagaggaccaccaggccctatggggcccccaggtgaacagggaccacgcggagaagct
ggtgctaagggtgataagggaaatattggacctcgaggaagagatggggagcccggcatc
cccggaaaccccggacccgccggcccacctggaccaccagggctcggagggaactttgct
gctcagatgtcccaaggttttgatgagaaggccgggggtgcttctatgggtgtgatgcaa
ggaccaatgggtcctatgggtcctcgtgggcccccaggacctaccggagcccctgggcca
cagggttttcaaggtgcccatggagaggctggagaggctggtgcagctggaccattggga
cctcgtggaccacctggaccccctggaaaaccaggaagtgatggtgagtctggcaaacct
ggcaaacctggtgagcgtggacctgcagggcctcagggagctcgaggattccctggaact
ccggggcttcctggactcaaaggacacagaggtcatcctggtttggatggagctaaggga
gagtatggtgctgcaggagccaagggtgaagctggtacccctggtgagaacggtgcccct
ggacccatgggcccacgtggtctgcctggtgagaggggtcgtcctggacctgctggagct
gcaggtgccagaggaaatgatggcttgtctggtcctgctggtccgcctgggcctgttggt
cctgctggagctcctggtttcccaggatcccctggagccaagggagaagctggtcccact
ggttcacgtggagctgagggcccacagggcccccgcggagaggctggtaccccagggtct
cctggacccgctggagcatcgggtaaccctggtactgatggtattcctggagctaaagga
tctgcaggtgctcctggtattgctggagctcctggattccctggcccccgtggcccacct
ggaccacagggagctacgggacctctggggccaaagggacagtctggagaccctggtctt
cctggattcaaaggtgaagctgggcccaagggagaactgggccctgctggtcctctaggt
ccccctggccccactggtgaagaaggaaagagaggcgcaagaggagagcctggagctgct
gggcctgtaggacctccaggagaaagaggagctcctggtaaccgtggcttcccaggtcag
gatggtcttgctggtgccaagggtgcccctggtgaccgtggtgttcctggtgctgctggt
cctaaaggtgctactggtgaccctggacgcacaggagagtctggcctccctggagccaga
ggtcttactggtcgtcctggagatgctggtcctcaaggcaaagttggaccaactggtgtc
cccggtgaggatggtcgccccggcccacctggtcctcagggagcccgtggacagccagga
gtgatggggttccctggaccaaagggagccaatggtgaacctggaaaaccaggagaaaag
ggtcttgtgggtcgtcctggtctgagaggtctatctggaaaagatggtgagactggtgct
gctggacctcccggccctgctggacctgctggagagcgaggagaacaaggacagcctgga
ccttctggcttccagggtctgcctggaccaactggtgccccaggagaggctggaaaacct
ggagaccaaggtgttcctggagaggctggagctcccggtgttgttggacctagaggcgaa
cgtggtttccctggtgagaggggtggggctggagctcagggtcttcagggaccacgtgga
cttcctggaacccctggaaccgatggacccaagggagccattgggccagctggtgctcct
ggacttcagggacccccaggtcttcagggtatgcctggagagagaggagctggtggcatc
ccaggacccaagggagacagaggtgacaacggacagaagggacctgagggagctcctgga
aaggatggtgctagaggtttgactggtcccattggtcctcctggtccagctggacccaat
ggtgctaaaggtgagactggacctaatggacctagtggtgctcctggtgttcgtggtgct
cctggtgaccgtggcgagatcggtcctcccgggcctgcaggctttgccggacctcctggt
gcagatggtcagcctggtgtcaagggagagtctggtgaggcaggacagaagggagaggct
ggtgctcttggacctcagggaccatctggggcccctggaccagtgggacctactggtgta
tctggacctaaaggagctcgtggtgctcagggagctcctggtgccactggtttcccgggt
gctgctggcagagttggaccccctggtcctaatggtaaccctggccctgttggtcctcct
ggtgctgctggtaaagatggaccaaagggtgctcgtggtgatgccggcctcccagggaga
cagggagacactgggctccgtggacctcctggcctgcagggagaaaagggagagactgga
aaggatggagaacgtggtggtgatgggcctccaggccctcaaggtctggctggaacccgt
ggtattgttggtttgcctggtcagcgtggagagaggggattccctggtctctctggacct
tctggagagccgggtaaacagggagctcccggttctgctggtgaacgtggtcctcctggg
cctgtaggaccccctggactcacaggacctgctggagagcctggtagagagggtacctcg
ggatcagatggacctcctggtagggacggagctgttggagtcaagggggagcgaggaaac
actggtcctgctggtgcccctggagctcctggtgcccctggatcccctggacctgttgga
ccactgggcaagcagggagacagaggagagtctggtgctcaaggacctgcaggacccgcc
ggacctgctggcgctagaggaatggctgggccccaaggaccacgtggagacaaaggagag
actggtgaggctggagagaggggacagaagggtcaccgtggcttcactggtctgcagggt
cttcctggacctcctggtcccgctggagattctggagctgctggacctgcaggaccaagt
ggtgctaagggaccccctggaccagtcggacctgctggcaaagatggatctaatggacag
cctgggcccattggaccccctggacctcgtggacggtctggagaaactggttctgctggt
cctcctggtaaccccggaccccctggtcctcctggtccacctggccccggcattgacatg
tccgccttcgctggtctgggtcagactgagaagggccccgatcctctgaggtacatgagg
gctgatgaggcctccacctccctgaggcagcatgatgttgaggttgattccacactcaag
tccctcaacagccagattgagaacctgcgaagtcctgatggctcccagaagaaccctgct
cgcacttgcagggacctgaaactcttcactcctgactaacccacttctctcacctctcca
ggtgactactgggttgatcccaacattggaagcatggccgacgccatgaaggtctactgt
aacatggagactggagagacctgtgtctacccgaggatcgccaaggtaccgaagaagaac
tggtggagcagcaagagcaaggaccgcaaacacatctggtttggagaaaccatgaatgga
ggattccatttcagctacgctcaggacggccctgctgccaacactgccagcatccagctt
accttcttgaggcttctgtccactgaggcatcccagaacctcacttaccactgtaagaac
agcatcgcctacatggaccaaaccacaggaaacttgaagaaggctttgctgctgcaaggc
tccaacgatgtggagatccgtgcagaaggcaacagtcgcttcacatacagcgtgttggag
gatggctgcaagaaacatacaggccactggggcaagactgtcatcgagtacaaaacacag
aaaacctcccgtctgccaattgtggacattgctcctctggacatcggaggagcagatcag
gagtttggagtggatgtaggcgcagtctgtttcttgtaa
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integrated database retrieval system
