Monopterus albus (swamp eel): 109967659
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Entry
109967659 CDS
T05607
Symbol
rtcb
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
malb
Monopterus albus (swamp eel)
Brite
KEGG Orthology (KO) [BR:
malb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
malb03016
]
109967659 (rtcb)
Enzymes [BR:
malb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
109967659 (rtcb)
Transfer RNA biogenesis [BR:
malb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
109967659 (rtcb)
Prokaryotic type
tRNA splicing ligases
109967659 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
109967659
NCBI-ProteinID:
XP_020469050
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRNYNDELQYLEKINSNCWRIKKGFVPNMKVEGIFYVNDSLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDERDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
EEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISQKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaaattacaacgatgagctgcagtacctggaaaaaatcaacagtaactgctgg
aggattaaaaaggggtttgttcccaacatgaaggtcgaagggattttctatgtgaatgac
tctctggagaaactgatgtttgaggagcttcgtaacgcctgccgaggaggaggcgtgggt
ggtttccttccagccatgaaacaaattggcaatgtggcagcactgcctggaattatacac
aggtccatcgggctcccagacgtccactctggatatggatttgctatcggaaacatggca
gccttcgacatgaacgaccctgaagctgtggtgtctccaggtggggtgggattcgacatc
aactgtggtgtccgtctgctgaggacaaacctggatgagcgggatgttcagccagtgaag
gagcagctggcccagtctctgttcgaccacatcccagtgggagtcgggtccaagggagtc
atccccatgggagccaaggacctggaggaggctttggagatgggtgtggactggtctctg
agggagggctatgcctgggccgaggacaaggagcactgcgaggagtacggcaggatgctg
caggccgaccccaacaaagtctcctccaaggccaagaagagagggctgccacagctgggg
actctgggagcaggaaaccactacgctgagatccaggtggtggatgagatctacaatgac
tacgccgccaagaagatgggtatcgaccacaaaggccaggtgtgcgtgatgatccacagc
ggcagcagaggcctgggacaccaggtggccacagatgctctggttgccatggagaaggcg
atgaagcgggataagatcacggtgaatgaccgacagctggcctgtgctcgtatcacctca
gaggaaggccaggactacctgaagggcatggctgctgcaggaaactacgcctgggtcaac
cgttcatcgatgaccttcctcaccagacaggccttttctaaagtgtttggcaccacgccg
gatgacctggacatgcacgtcatctacgacgtttcgcacaacattgctaaagtggaagag
cacatggtggatgggaaacagaagactctgctggtccaccgcaaaggatccacccgagcc
ttccccccgcaccaccccctcatccctgtagactaccagctcacgggtcagccggtgttg
atcggagggacgatgggcacctgcagttacgtcctcacagggaccgaacaaggaatgaca
gaaacgttcggcaccacctgtcatggagcaggtcgcgctctgtctcgagcaaagtcccgc
aggaatctggacttccaggacgtcttggacaaactggctgacatgggcatcgccatccga
gtggcttcacccaaactggtcatggaggaggctcctgaatcatacaagaacgtgacagat
gtggtcaacacgtgtcacgacgccgggatcagccagaaggcgatcaaactacgacccatc
gctgtgatcaaaggctga
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