Monopterus albus (swamp eel): 109968454
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Entry
109968454 CDS
T05607
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
malb
Monopterus albus (swamp eel)
Pathway
malb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
malb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109968454 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
malb03019
]
109968454 (ddx6)
03036 Chromosome and associated proteins [BR:
malb03036
]
109968454 (ddx6)
Enzymes [BR:
malb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109968454 (ddx6)
Messenger RNA biogenesis [BR:
malb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109968454 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
109968454 (ddx6)
Chromosome and associated proteins [BR:
malb03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109968454 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
CMS1
SNF2-rel_dom
NA-iREase2
AAA
Motif
Other DBs
NCBI-GeneID:
109968454
NCBI-ProteinID:
XP_020470396
UniProt:
A0A3Q3J8P2
LinkDB
All DBs
Position
Unknown
AA seq
469 aa
AA seq
DB search
MSTARTENPVILGLSNQNGQIRGSVKPTGAPGGGGGGLQQQQLNQMKGTVNNGNSLPAPT
TNAVIKPGDDWKKNLKLPPKDMRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILAXXXXXXXXLKKDCIQALVIVPTRELALQVSQICIQVSKHMGGV
KVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVNQVQMIVLDEADKLLSQ
DFVVMMEEILGFLSKQRQILLYSATFPLSVQKFMNAHLQKPYEINLMEELTLKGVTQYYA
YVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRN
RVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRIGRSGRFGHLGLA
INLITYDDRFNLKGIEEQLGTEIKPIPGIIDKSLYVAEYHSESGEEVKP
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgccaggacagagaaccccgtgattttgggcttgtctaaccaaaatggacag
atcagaggctcagtgaagcctactggagcaccaggtggaggtggaggaggcctacaacaa
cagcaactgaaccagatgaaaggcacagtcaacaatggtaattccctcccggcccctaca
actaacgctgtcatcaagcctggagatgactggaagaaaaatttgaaattgcccccaaag
gacatgaggatgaaaacgtcggatgtgactgcaacaaaaggcaacgagtttgaagattat
tgcctaaagagggagctgctcatgggaatctttgaaatgggctgggaaaagccatctcca
atccaggaggaaagcattcccattgcactgtcaggaagggatattttggccnnnnnnnnn
nnnnnnnnnnnnnacctgaagaaggactgcatacaagctttggtcatagtgcccaccaga
gaactggctttacaagtaagccaaatatgtatccaggtcagcaaacacatgggtggagtg
aaggtaatggcaaccacaggtggaaccaacctccgtgatgacatcatgagactcgatgaa
acggtacacgtggtcattgccactcctgggaggattttagatctcatcaagaaaggagtg
gccaaagtcaatcaagtgcagatgattgttctggatgaagctgacaaactcctgtctcag
gattttgtggtcatgatggaggagatactgggcttcctatccaaacagaggcagattctg
ctttattctgcaaccttccctctcagcgtgcagaagtttatgaatgcacacttgcaaaaa
ccctatgagatcaacctaatggaggagcttacactgaagggtgtgactcagtattacgct
tatgtaactgaaaggcaaaaggtccattgccttaacaccttgttctccaggctccagatc
aaccagtctataatcttttgcaactcctctcagagagtggagctccttgccaagaagatc
tcccagcttggttattcatgtttctacatccatgccaagatgagacaggagcatcgtaac
cgtgtgttccatgacttcagaaatggcctgtgtcggaatcttgtctgcactgacctcttc
acaagaggaattgacattcaagctgtgaatgttgtgatcaattttgattttcccaagctg
ggagaaacataccttcatcgcatcggtagatctggtcgctttgggcacttgggtctagcc
atcaacctcatcacttatgatgatcgcttcaacctgaaagggattgaggagcagcttgga
acagagatcaagcccatccctggcatcattgacaagagcctgtatgtggcagagtaccac
agcgagagtggtgaagaagtcaagccatga
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