Monopterus albus (swamp eel): 109971201
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Entry
109971201 CDS
T05607
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
malb
Monopterus albus (swamp eel)
Pathway
malb04510
Focal adhesion
malb04512
ECM-receptor interaction
malb04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
malb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109971201
04518 Integrin signaling
109971201
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109971201
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
malb00536
]
109971201
Glycosaminoglycan binding proteins [BR:
malb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109971201
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
109971201
NCBI-ProteinID:
XP_020474994
LinkDB
All DBs
Position
Unknown
AA seq
1492 aa
AA seq
DB search
MFSFMDSRTLLLLVATQVCLLSVVRCQEKIEQSDVLSCSQDGQRYSDKDVWKPEPCRICV
CDTGTILCDEIVCEELKDCPKPEIPFGECCPICAADTSPPIGTPGAKGQKGEPGDITDVV
GPRGPSGPTGPPGEQGPRGPRGEKGEKGNPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAAQMTSGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGSPGEAGEPGSS
GPMGPRGPPGSPGKPGDDGEAGKSGKPGDRGPSGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGETGAVGAKGEAGAPGESGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLSGPAGPP
GPVGPSGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSSGPAGAPGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPP
GLQGAPGPQGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPS
GASGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPLGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLAGASGLRGLPGKDGETGPAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGGTGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGVKGAIGPAGAQGTQGPPGLQGMPGERGGXIPGPKGDRGDIGEKGPEG
APGKDGARGLTGPIGPSGPSGPNGEKGESGPAGPVGVPGTRGAPGDRGETGPPGPAGFAG
PPGADGQPGTKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVFGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGSPGEKG
DPGEDGLPGALGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGPGDRG
PPGPVGPPGLTGPAGEPGREGNSGSDGPPGRDGAAGIKGDRGNTGPAGAPGAPGAPGAPG
PVGPTGKQGDRGEAGAQGPAGPSGPAGARGMPGPQGPRGDKGEAGEAGERGQKGHRGFTG
LQGLPGPPGQGGDQGATGPAGPAGQRGPPGPVGPAGKDGANGLPGPIGPPGPRGRSGETG
PAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGSLRQHDAEVDS
TLKSLNNQIENIRSPEGSKKNPARTXADLLFFCPLLIFPVGEYWIDPNQGCTIDAIKVFC
NMDTGESCVYPKPSKIPRKNWWSSKSKDRKHIWFGETMNGGFHFSYGDDSLAPNTAAIQM
TFLRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVME
DSCTKHTGQWGKTVMEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCFL
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactctactgctacttgtagcaactcaagtctgtcta
ttatccgttgtaagatgtcaggagaagatcgaacaatcggatgtgcttagctgttcacaa
gatggacagcgatatagtgacaaggacgtatggaaaccagagccttgtcgcatctgtgtg
tgtgacactggaaccatcctgtgtgatgaaattgtctgcgaggagcttaaagactgcccc
aaacctgaaatcccattcggagagtgttgccccatctgcgcagctgacacgtctccgccc
attggaacacctggagctaagggtcagaaaggtgaacctggagacattactgatgttgta
ggaccaagaggaccatctggcccaacggggccgccaggagagcaaggcccccgtggacca
agaggagaaaaaggagagaagggaaacccaggtccacgtggcagagatggtgagcctgga
acccctggaaaccctgggccccctggtcctccaggacctaatggaccccctggccttggt
gggaactttgctgctcagatgaccagtggctttgacgagaaggccggcggcgcacagatg
ggtgttatgcaaggaccaatgggccctatgggacccagaggaccacctggccccactgga
tcacctggcccacaaggtttccaaggcagcccaggagaggctggagagcctggatcatct
ggtcccatgggtcctcgtggcccccctggatctcctggaaagcctggagatgatggtgag
gcaggcaaatctggcaaaccaggcgaccgtggaccttctggaccccagggagctcgtgga
ttcccaggaacacctggcctgcctggcatcaagggacacagaggttatccaggtcttgat
ggtgcaaagggagagactggagctgttggcgctaagggtgaggctggtgctcctggagag
agcggtgctcctggaccgatgggacctcgtggtttgccaggtgagagaggtcgccctgga
cccagcggagctgctggagcacgtggaaatgatggcttgtccggccctgctggcccccca
ggccccgtcggtccctctggagctccgggcttccctggctctccaggtgcaaagggagaa
gctggtcctactggtgctcgtggacctgagggtgctcagggacctcgtggagagtctggc
actcctggctcatctgggcctgctggtgcgcccggcaacccaggtactgatggtatccct
ggagctaaaggatctgctggtgctcctggtatcgctggtgctcctggtttccctggacct
cgtgggcctcctgggccacagggagcaactgggcctcttggccctaaaggaacatctgga
gacccaggtattccgggattcaaaggagaagctggacccaaaggagaaatcggcccacct
ggcctccagggagcacctggcccacaaggagaagagggcaagagaggacccaggggcgaa
cctggtgctgctggacctcttggacctcctggagagagaggagcccctggtaaccgtggt
ttcccaggtcaagatggtctggcaggtccaaagggagccccaggtgagcgtggaccctct
ggtgccagtggccctaagggtgctggtggtgaccctggccgtcctggagagcctggtctg
cctggtgccagaggcctgactggtcgcccaggggacgctggtcctcaaggcaaagttgga
ccttctggagctcctggtgaggatggacgtccaggacccctgggcccacagggagcccgt
ggacagcctggtgtcatgggattccctggacccaagggagcaactggtgaacctggcaag
tctggcgagaaaggactggctggagcttctggtctgagaggtctgcctggtaaagatggg
gaaactgggcctgctggaccccctggccctgctggtcctgctggagagagaggagagcaa
ggacagcccggtccatcgggcttccagggtctgcctggacctcctggccctcctggtgag
ggaggcaagcctggagaccagggtgtccctggagaggctggagcagctggtggtactgga
cccagaggagagcgtggtttccctggagagagaggagctgctggccctcagggtctgcag
ggacccagaggtctgcctggaacccctggaactgatggagtcaagggagccattggacct
gctggtgcccaaggaactcagggccccccaggcctgcagggtatgcctggagagagagga
ggcngcattcctggacccaaaggagacagaggtgacattggagagaaaggacctgagggt
gctcctggcaaagacggtgccagaggtctcactggtcccattggtccttctggtccttct
ggtcccaacggtgagaagggtgaatcaggtcctgctggtcctgttggtgttcctggcacc
cgtggtgctcctggtgacagaggtgaaactggacctcctggacctgctgggtttgctgga
ccccctggtgctgacggtcagcctggaaccaagggagagcagggagaatctggacagaag
ggagatgctggtgcccctggaccccaaggcccatctggtgcccctggacctgcaggacct
acaggtgtttttggacctaaaggcgctcgtggtgctcagggacctcctggtgccactgga
ttccctggagctgctggccgagttggaccccctggccccaatggtaatcctggaccagct
ggtcctgctggccctcctggtaaagatggacccaagggtgtgagaggagatggtggaccc
ccaggcagacagggtgatgctgggctccgcggccctgctgggtctcctggagagaaagga
gatcctggagaggacggtcttcctggtgccctaggtccttcaggtcctcagggtttggct
ggtcagcgcggtattgttggtctacctggccagcgtggtgagagaggattccctggtctg
cctggaccctctggtgaacctggaaagcaaggagcgcctggtggccctggagaccgtgga
cccccgggacccgtgggacctcctggactcactggacctgcaggagagcctggcagagag
ggaaactctggatctgatggacctcctggtagagatggtgctgctggaatcaagggtgat
cgtggtaacaccggtcctgctggtgctcctggtgctccaggtgctcctggtgctcccggc
ccagttggtcccaccggcaaacagggagacaggggagaggctggtgcgcaaggacctgct
ggaccttcagggcctgctggagccagaggaatgcctggaccccaaggaccccgcggtgac
aagggggaggctggagaggctggtgagagaggacagaagggacacagaggtttcactggt
ctgcagggtctgcctggacctccgggtcaaggtggagaccaaggtgctactggacctgct
ggacctgctggacaaagaggaccaccgggacctgttggccctgctggaaaagatggtgca
aacggtctgccaggaccaattggaccccctggacctcgtggtcgcagtggagagactggt
cctgctggtccccctggaaaccctggaccccctggtcctcctggtccccctggccctggt
attgacatgtctgccttcgctggtttgggtcagactgagaagtcacctgatcctctcagg
tacatgagggctgaccaggcttctggaagtctccgccagcatgatgctgaggtcgactcc
accctcaaatctctcaacaaccagattgagaacatccgcagtcctgagggatccaagaag
aatcctgctcgcacnnaggctgatctgctttttttttgtcctctcttgatcttccctgta
ggagagtactggattgatcccaatcagggttgtaccatcgatgcaatcaaggtgttctgc
aacatggatacaggggagtcctgtgtctaccctaaaccttctaaaatccctcgcaagaac
tggtggtccagcaagagcaaggatcgcaaacacatctggttcggagagacaatgaatgga
ggattccatttcagctatggtgatgacagcctggcacccaacactgctgccattcagatg
acgttcctgagactgctgtccaccgaagcttctcaaaacctcacctaccactgtaagaac
agcgtggcctacatggacgcctcaacgggcaacctcaagaaggccgtcctgctgcagggc
tccaacgatgtggagatcagagctgagggcaacagccgttttacatacagcgtgatggag
gacagctgcacgaaacacacgggacagtggggcaagacagtgatggaatacagatcgcag
aagacctctcgtctgcccattgtggacattgcccccatggatatcggcggagcagaccag
gagttcggtgttgatatcgggccagtctgcttcttgtaa
DBGET
integrated database retrieval system
