Monopterus albus (swamp eel): 109971310
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Entry
109971310 CDS
T05607
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
malb
Monopterus albus (swamp eel)
Pathway
malb03008
Ribosome biogenesis in eukaryotes
malb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
malb00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
109971310 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
109971310 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
malb03021
]
109971310 (xrn2)
03019 Messenger RNA biogenesis [BR:
malb03019
]
109971310 (xrn2)
03009 Ribosome biogenesis [BR:
malb03009
]
109971310 (xrn2)
03016 Transfer RNA biogenesis [BR:
malb03016
]
109971310 (xrn2)
Transcription machinery [BR:
malb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109971310 (xrn2)
Messenger RNA biogenesis [BR:
malb03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
109971310 (xrn2)
Ribosome biogenesis [BR:
malb03009
]
Eukaryotic type
Pre-60S particles
RNases
109971310 (xrn2)
Transfer RNA biogenesis [BR:
malb03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
109971310 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
109971310
NCBI-ProteinID:
XP_020475115
LinkDB
All DBs
Position
Unknown
AA seq
969 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIVVHCLEEKGKECNGVRVPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRKVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELVEEKHRIREEIIQRGGYLPPEEIKERFDSNCITPGTEFMDNLAHCLRYYVAD
RLSNDPGWKNIVVFLSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCGQMGHEIKDCQGASRVKQGQHDEFADTGPAAEQE
FIFIRLCVLREYLARELTMASLPFPFDFERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHRTGGYLTENGFVNLERVELIMQAVGVAEDNIFRKRKEDDENFKRRMKE
KRKRMKAEQQGPAYLTTGQFAPQALGRRDRPEPVQNARHQAYDMRMQSREQHNKDAAQSL
KALMRNGGNSSAGPSDIAESRGLKRKAEDSDSEPEPEDNVRLWEEGWKQRYYKTKFDVDV
SDEDFRQKVVQSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFTNIKGMFTEFEKGT
KPFKPLEQLMGVFPAASGNFLPSSWRNLMTSEDSSIIDFYPDDFAIDLNGKKYAWQGVAL
LPFVDERRLRAALADVYPDLTPDEVKRNSLGSDLLCLGKSHPLLDFIQELYRTESQEATE
IPAELCHGIQGTLNLDDDPILPDKTVKSPIPQLRDISQNSAIGIKFKDPAYADGFVFKAV
LLPGAKIPNKVLKPDNWVKGSQEPWRPQLGFNPNRQQAHLDQSGFRALGHSLNRNQQGGQ
YSNAPPPSSYQPGNYHRPRGSSHQSFQHSRQNSLLATPPSFHQPQYPRQQQYEGGGHGWD
RAVQSQQLAYQQNMSRGRGGSGPGGYQQRYDQRRDDWHDRRDDRGQHHQGYSSARGYPLP
PQSRRYNWN
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccagcgttttttcgttggcttagccgaaaatatccatctattgttgtacat
tgtttggaggaaaaggggaaagaatgtaatggagtccgtgttcccgttgatacaaccaag
ccaaaccccaatgaggtggagtttgacaatttatacttggacatgaatgggatcattcac
ccttgtacacatccagaagacaaacctgctcccaaaaatgaggatgagatgatggtggcc
atttttgagtacatcgaccgcctgtttaatatcgtgcggcccaggaaagttctctacatg
gccatcgatggagtggctccacgggccaaaatgaaccagcagcgctctcggcggtttcgt
gcctccaaagaaggagtggagttagtggaggagaagcatcgcataagggaggagattatc
cagagaggaggttatctcccacctgaggagattaaggagaggttcgacagcaactgtatt
actcctggaacagagttcatggacaacctggcacattgtcttcgatactacgtcgcagac
agactcagcaatgatccaggatggaagaatattgttgtcttcctgtctgatgccagcgtt
ccaggtgaaggtgaacacaagatcatggacttcatcaggagacagagagctcaacccaac
cacgaccccaacacacaccactgcctgtgtggagccgatgctgacctgatcatgctgggc
ctggccacccacgagccaaacttcaccatcatcagagaggagttcaaacccaacaagccc
cgtccctgtgcgctctgtggacagatgggtcatgaaatcaaggactgtcagggggcgtcc
agagtgaagcagggacagcatgatgagtttgccgacacagggcctgcggccgagcaggag
ttcatattcatcagactctgtgtgctgcgggagtacctcgccagagagctgaccatggcc
agcctgccatttcccttcgactttgagaggagcatagacgactgggttttcatgtgtttc
tttgttggaaatgacttcctaccacacttgccgtccttagaaatcagagagggagcgata
gatcgattggtcggcatctacaaagatgttgtgcacagaaccggaggttacctaacggaa
aacggcttcgtcaacctggagcgggtcgagttgatcatgcaggcggtgggcgtggccgag
gacaacatcttcaggaaacgcaaggaagatgatgaaaatttcaagagaagaatgaaagag
aaacgaaaaaggatgaaagctgagcagcaaggccctgcctacctgaccacgggccagttc
gccccccaggccctggggcgaagagaccgacctgagcccgtccagaatgcccggcaccag
gcctacgacatgaggatgcagtccagggagcaacacaacaaggatgctgctcagtcactg
aaggctctgatgcggaacggaggcaactcatctgcagggcccagtgacattgcagagagc
agggggttgaagaggaaagctgaggacagtgacagcgagccagagcctgaagacaatgtc
aggctgtgggaggaaggctggaagcagagatactacaagaccaagtttgatgtggacgtg
tcagatgaggatttcaggcagaaggtggttcagtcctatgtggagggtctctgctgggtg
ctgcgctactattaccagggctgtgcctcctggaagtggtacttccctttccactacgcc
ccgttcgcctctgacttcacaaacatcaaagggatgttcaccgagtttgagaaggggacc
aagccatttaagccactggagcagctgatgggagtgtttcctgctgccagtggcaacttc
ctgccctcatcgtggcggaacctcatgaccagtgaggattcttcaatcattgatttctac
cctgacgacttcgccattgatcttaacggcaagaaatacgcctggcaaggtgtggccttg
ttgccttttgtggatgaacggcggctgagggcggctctggccgacgtctaccccgacctc
acacctgatgaagtgaaaagaaacagcctgggaagtgacttgttgtgtctgggcaagtct
cacccactcttggacttcatccaggagctctaccgcacagaatctcaggaggccactgag
atccctgcagagctgtgtcatggaatccaaggtacattaaaccttgatgatgaccctatt
ctaccagataagacggtgaagtcccccatcccacagctgcgtgacatctcacagaacagt
gcgatcggaatcaagttcaaggatcctgcgtatgcagatggctttgtgttcaaggcggtc
ctcctgcctggagccaagattcccaataaagtcctgaagccagacaactgggtgaagggg
agccaggagccttggagaccccagctgggcttcaacccaaacagacaacaggctcacctg
gaccagtccggcttcagagctctgggtcacagtctgaacagaaaccagcagggtggacag
tacagcaacgcccccccaccgagcagctaccagccaggaaactatcatcgtcctcgcggc
agcagccaccagtctttccagcattccaggcagaacagtttgctggcaacacctccctcc
ttccaccagccccagtatccaaggcagcagcagtacgaaggtgggggccacggctgggat
cgggccgtgcagtcgcagcagctggcctaccaacagaacatgagccgcgggcggggaggg
agtgggcccggcggctaccagcagcgctacgatcagcgcagagatgactggcacgatcgc
agggacgaccgggggcaacaccaccagggctacagctcggccagaggttaccctcttcct
cctcagtccaggaggtacaactggaattaa
DBGET
integrated database retrieval system
