Monopterus albus (swamp eel): 109973316
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Entry
109973316 CDS
T05607
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
malb
Monopterus albus (swamp eel)
Pathway
malb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
malb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109973316 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
malb03019
]
109973316 (parn)
Enzymes [BR:
malb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109973316 (parn)
Messenger RNA biogenesis [BR:
malb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109973316 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
Motif
Other DBs
NCBI-GeneID:
109973316
NCBI-ProteinID:
XP_020478465
LinkDB
All DBs
Position
Unknown
AA seq
687 aa
AA seq
DB search
MEVTRKNYKDCLNTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLLFQFGLCTFKYDQTKSKYITKPFNFYIFPKPFNRTSPDIKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQEEEVQLREQTEERRNQHANGVGTPSYISPSSSKCSAHVPEEHKD
FINRVVGKVEALFTSSEKTLDLEPCTGFQRKLIYQTLNWKFPKGLHVETMETEKKERYIQ
VSKVDEEERKRKEQLKLEREQEELNDAVGFSRVIHAVSKSGKLVVGHNMLLDVMHTIHQF
YCALPEDLQDFKEVTMCVFPRLLDTKLMASTQPFKELITNTSLAELEKQLKETPFKSPQV
ETAEGFPSYDTAQEQLHEAGYDAYITGLCFISMANYLGSFLTPPKAYISARSKLIEPFFN
KLFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQTDQVQIAMNTSRYAESYRIQTYAEYIQGKQQEKEKPSQTAKTWGEDSWVKPHY
TPSTCSSGFGYPRSLRKRSISPVQGEHGGSREALITDGWSHYLYPDSTCSKKMKTDDTTG
QSNAEAVESKTSEGWLKTIDSSDSVRFSPVPDEEKSPEGTDPANNAEGTVIWQQTPSVLG
RKGQKNKKKKSEAAESTTSLFEVPEVW
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgaaaaaattataaagactgtttaaatactgtgtacagcgccatagag
gaggctgactttcttgctatcgatggagaattttcagggataagcgacggtcctaatgtc
agtgcactaaccaacgggctggacactccagaggaacgatacaccaagcttaaaaagcat
tccatggattttctgctgttccagtttggattatgtactttcaagtacgaccagacaaag
tcaaagtatattacgaagccttttaatttttatatattcccaaaaccattcaacaggacc
tcccctgacataaagttcatctgccaaagttccagtattgactttctggccagtcaggga
tttgatttcaacaaggtgttctgtcatggaatcccatacctaaatcaagaagaggaagtt
cagctgagggagcagacagaggaaagaaggaaccaacatgccaacggtgtggggacccca
tcatacatctctccatcctcctccaaatgctctgcacatgtacctgaggagcacaaagac
ttcatcaacagggtggtggggaaggttgaggcccttttcactagctcggagaaaactttg
gacttggagccatgtactggatttcagaggaagctgatataccagacactgaactggaag
tttcccaagggtcttcatgtggaaaccatggaaacagaaaagaaagagcgatacattcag
gtcagcaaagtagatgaggaggagaggaagaggaaggaacagctgaagctggagagagag
caggaggagctaaatgatgcagttggtttctccagggtcattcatgctgtctctaaatct
ggtaaacttgtggttggccacaacatgctgctggatgtgatgcacaccatccaccagttc
tactgcgctctgccagaggatcttcaagactttaaagaggtcacaatgtgtgtcttcccc
agacttctggacacaaagttgatggcttccacacagccctttaaggagctgattactaac
acatctctggcagagctggaaaaacagttgaaggagacccccttcaagtcacctcaagtt
gaaaccgccgaggggttccccagttacgacacagcccaggagcagctccatgaggcaggg
tatgatgcctacatcactggcctctgtttcatctccatggccaactacctgggttccttt
ttgactccaccgaaagcttacatctcagctcggtccaaactcattgagcctttctttaac
aagctttttctaatgaggataatcgatattccctacctcaacatcacaggaccagatttg
caaccgaaaagagaccatgtcctgtatgtcaccttcccaaaagaatggaagaccagtgac
ctctaccagctatttagtgcctttgggaacatccaagtttcatggatagatgacacatca
gcatttgtgtccctaagtcaaacagaccaggtacagatagctatgaacaccagccgctat
gcagagagttacaggatccagacctatgcagagtacatccagggcaagcaacaggaaaag
gagaagcccagccagacggccaaaacctggggagaggacagctgggtgaagcctcactac
accccctctacttgttcaagtggttttggctatcccaggagcttgaggaaacgcagcatc
agtcctgttcagggcgagcatgggggcagcagggaggccctaatcacagatggctggagt
cactacttgtacccagatagcacatgcagcaagaaaatgaaaactgatgatacaactgga
cagtcaaatgctgaagctgttgagagcaagacatcagagggatggctaaagacaattgac
tcatcagattcagtgcggtttagtccagtccctgatgaggagaaaagtcctgagggcaca
gatccagccaataatgctgaggggacagtcatctggcaacaaacaccatcagtccttggg
aggaaaggtcaaaagaacaagaagaagaagtctgaagcggctgaatctacaacatcgctg
tttgaagtcccagaggtctggtag
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