Monopterus albus (swamp eel): 109974211
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Entry
109974211 CDS
T05607
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
malb
Monopterus albus (swamp eel)
Pathway
malb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
malb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109974211 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
malb03021
]
109974211 (pcf11)
03019 Messenger RNA biogenesis [BR:
malb03019
]
109974211 (pcf11)
Transcription machinery [BR:
malb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109974211 (pcf11)
Messenger RNA biogenesis [BR:
malb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109974211 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
VHS
Motif
Other DBs
NCBI-GeneID:
109974211
NCBI-ProteinID:
XP_020479955
LinkDB
All DBs
Position
Unknown
AA seq
1383 aa
AA seq
DB search
MDCLLINGYGIEKAGVRFHGSLCLKMDDKAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENLNFAKDIVAIIEAQISKAPPAEKLPVLYLVDSIVKNVGGQYLEVFAKNLITSFICV
FEKVDENTRKSLFKLRSTWDDVFPLKKLYALDVRVNSLDPAWPIKPLPHTVNASIHVNPK
FLKQSEDVSSPQPVITQAPPATTAHQPTPAISPSSVTQEQLIRQQLLAKQKQLLELQQKK
IELELEQTKAQLAGGFVLPTSTPAAPSTASKPVSQTAPVVRSWISPSQTQTDNKPTLRLT
PSGPPAAPQPKEQPAGKKDAPPTTGSPTLTPEKRLPEKPTRLEKARTPKKEVSEEKPKSK
SLSPMAKSIQSKTKQTECEAQKSADGTKKDPRLKKRTQDKTGEAKDDEMKEKKRCSNKKD
REEAARGIEPQRFSKGKLVNGSVTKHDREESTEKIEFKAGGNARTHARKRTRSRSRSRSP
TTSPKRKERRSPKSRTRSSSLSPSPSHKPFKPRRVRTDEPQHVKQGREDRLAPKKNQSES
RRSKRPGEDRHCESRDSHSPRSHDGGSKENKETPHRWRSGWEDNKHLKLSEDVKPGPQRH
KPYGTPTRPTTPRTTKHRLSVDANLQIPDVLNSASKKDLLRRASKRLESGEISQEEFLNM
AHQIKHFFQYQEEKQQHSESWDDSADFSAKKQTLMATPPSPLPRPHDTMDAAELSYYEHK
SKLRKTQVTHRVVEDEWEGRESPEDGEEGGQGDKVTGGRSAPRKYSRMPRDRPGERQSEE
PRPPPGPMIEEYNHGKEFPPLKSLQGLRFRRRVDTRESKRSEVRFWSCGVSGSRTVTLQQ
GEREWNSPLTERQREEQKSGYDAPRRYALHPDPRRPEGPPLPGSMGFQQQRPVLFEGPHN
QMGPMRFDGPGHFEGPGQQGPRFDIPVVPPRFQGPPGQQGPPRFPQHNLQPPMRQMAPPV
YENPMGPQQNFNMAPQRFPDPMNPQFPAGPMTFPAQPNLQQGGNFNMQPAPAPFYNPAPP
TVGMQQPVNMIGNVNQPFLPQNPVPFRPPAQQVPPENHFGQVDVNDLLSKLISTGIIKPS
QPDAALSTSSESSSTTPAPPPVVEEEEEEEQEQEVEVEEEEDDVPDLTSFAIDDMKQRYE
SIVTKLYSGNQCCLCSMRFTTAQTDMYADHLDWHFRQNHAGKVASKKVTHRRWYYSLTDW
IEFEEIADLEERAKSQFFEKENEEEVQKSQAAAKEREFQSHCGQQNVSVCERSQAGHGVF
VCFLLQSCEICQEPFETYWVEEEEDWFLKNAIRVDDKNFHPSCFEDYKNTSSYLDITPSP
NKVLAEHPLSAFVKTEEESTSCNMASSLDKEEAECEGGEHPEVKTEEEQQVEPDQVKSEE
DKL
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctactaatcaatggttatggtattgaaaaggctggtgtaagatttcacggg
tcactctgcttaaagatggacgacaaggcggcgagggaagatgcctgccgagagtatcag
tcctcgctggaagacctaacattcaacagcaagccgcacatcaacatgctgaccattctg
gccgaggaaaacctcaacttcgccaaggatatcgtcgcaattattgaagcacaaataagc
aaggcgccacctgctgagaagctgccagttttgtacttagtggattccatagtgaagaat
gttggaggacagtaccttgaagtgtttgctaaaaacctaatcacttcatttatatgtgtc
tttgaaaaggtggatgaaaacactagaaagagtctgttcaagttacgatcgacgtgggat
gatgtgtttcccctgaagaaactgtatgcgctggacgtccgggtcaactctctggaccca
gcctggcccatcaagccgctgccgcacactgtcaatgccagcattcatgtcaaccccaag
ttcttgaaacagtctgaggacgtatcctctccacagccggttatcacccaggccccccca
gcaaccaccgctcaccagccgaccccagccatcagcccgtccagtgtgacccaggagcag
ctgatccggcagcagctgctggccaaacagaaacagcttctggagcttcagcagaagaag
atcgagctggagctggagcagaccaaagcacagctggctggtggttttgtgttacccacc
tcgactccagcagcgccgagcacagcgtcgaagcccgttagccaaactgcccctgtggtc
cgatcctggatctctccttctcagactcagactgacaacaaacctaccctccgtctgacg
ccctctggccccccagctgccccccagcccaaagaacagcctgctgggaaaaaagatgct
ccccccacaactggaagtcccactttgacacctgagaaacgactgccggagaaacccacc
cggctggagaaggccaggaccccgaagaaagaggtgtcagaggagaagccaaagtccaag
tctctgtctccaatggctaaaagcatccaaagcaaaaccaaacagaccgagtgtgaggct
cagaagtcagctgatggcacaaagaaagatcccaggctgaagaaacgtactcaggacaag
actggagaggccaaagatgatgagatgaaggagaagaaaagatgcagcaacaagaaggac
agagaggaggccgcacggggaatagagcctcagaggttcagcaaagggaagctggtgaac
ggctcagtgaccaaacacgaccgcgaggagtccaccgagaagatcgagttcaaggctgga
ggcaacgctcgaacacacgccaggaaacgcacccgttctcggtccaggtcgcgatccccc
accacctccccgaagaggaaggagaggcgctcaccaaagagcaggacccggagcagctcc
ctgtccccgtcaccctctcacaagcccttcaaaccacggagggttcggacagatgaacca
cagcacgtcaagcaggggcgagaggaccggctggcgcctaagaagaaccagtcggagagc
cggaggtcgaagaggccaggggaggaccggcactgtgaatccagagactctcactctcca
cggagccatgacggaggcagcaaggagaataaagagactcctcaccgctggagaagtggc
tgggaggacaataaacatctgaagctgtcagaggatgtgaagcctggacctcagagacat
aaaccgtatggcaccccgactcggcccaccaccccccgaaccacgaagcaccgcctcagt
gtggatgccaacctgcagattcctgatgtcctcaactctgcctccaagaaggacctgctc
aggagggccagtaagcgtctggagagcggagagatttcccaggaggagttcctgaacatg
gcccaccagatcaaacacttcttccagtatcaggaggagaagcagcaacattctgagagc
tgggacgactctgccgacttctctgccaagaaacagacactgatggccacacccccatca
cctctgccccgcccccatgacactatggatgcggcggagctgtcatactatgagcacaag
tccaaactgaggaagacccaggtcactcaccgtgtggtcgaagacgagtgggagggcagg
gagagtccagaggatggtgaggaagggggacaaggcgacaaggtgaccggtggccggagt
gcgccacgaaaatacagccggatgccacgggacagaccgggtgagaggcagagtgaagag
ccccgccctccgccaggccccatgatcgaggagtacaaccatggcaaagagttcccccct
ctgaagtctctgcagggccttcgcttcaggaggcgagtcgataccagagagtcaaagagg
tcagaggtcaggttctggagctgcggggtgtcagggtctcgaacagtgacacttcagcag
ggtgagagagagtggaactcgcccctgactgagcgccagcgtgaggaacagaagagtggc
tatgacgctccgcggaggtacgccctgcaccctgaccctcggaggcccgaggggcctcca
ctccctggcagtatgggcttccagcagcagcgacccgtgcttttcgagggtcctcacaac
caaatgggacccatgaggtttgatggtcccggtcacttcgagggtcccggccagcaaggt
cccaggtttgacattcctgttgtgcccccaaggtttcagggtccccctggccagcagggg
cctcccaggtttccccaacacaacctgcagccccccatgaggcaaatggccccacctgtt
tatgagaaccccatgggcccccagcagaacttcaacatggccccccagcgttttccagat
cccatgaaccctcagttccctgcagggccgatgacgttcccagcacaaccaaacctgcag
caagggggaaacttcaacatgcagccagcccccgcccccttctacaaccctgctcccccc
actgtcggcatgcagcagccggtgaacatgattggaaacgtgaaccagcccttcctacct
cagaacccagtgcctttcagaccaccggctcagcaggtccctccggagaaccacttcggg
caggttgacgtcaacgacctgctgtccaaactcatctccaccggcatcatcaaaccctct
cagcccgacgctgctctgagcaccagcagtgagtcgagctccacaactccagcaccccca
cctgtggtggaggaggaggaggaggaggagcaggagcaggaggtggaggtggaggaggag
gaagatgatgtcccggaccttaccagcttcgccatcgatgacatgaaacagcgctacgag
agcattgtgaccaagctgtactcagggaaccagtgctgcctgtgcagcatgaggttcacc
actgctcagaccgacatgtatgccgaccacctggactggcacttcagacagaaccatgcc
ggcaaggtcgccagtaagaaggtcacgcaccgccgctggtactacagcctcacggactgg
atcgagtttgaggagattgctgacctggaggagcgagccaagagtcagttctttgagaag
gagaatgaggaggaggttcagaagagccaggcggcagccaaggagagggagttccagagc
cactgtggccaacaaaatgtcagcgtgtgtgagaggagtcaagctggtcatggtgtgttt
gtgtgtttcctcctgcagtcatgtgaaatctgccaggagccgtttgagacgtactgggtg
gaggaggaagaggactggttcctgaaaaacgccatcagggttgatgacaagaacttccat
ccctcctgttttgaagactataaaaatacgtcgtcgtaccttgacatcacgccgtcgccc
aacaaggtgctggccgagcacccgctgagcgcctttgtaaagacagaagaagagagcact
tcctgtaacatggccagttctttagacaaagaggaggcggagtgtgagggcggcgagcat
cctgaggtgaaaacagaagaagagcagcaggttgaaccagaccaagtgaagtcagaagaa
gacaaactgtga
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