Marivivens sp. LCG002: QQG91_01125
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Entry
QQG91_01125 CDS
T10653
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
malc Marivivens sp. LCG002
Pathway
malc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
malc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QQG91_01125 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
malc03021
]
QQG91_01125 (rpoC)
03400 DNA repair and recombination proteins [BR:
malc03400
]
QQG91_01125 (rpoC)
Enzymes [BR:
malc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QQG91_01125 (rpoC)
Transcription machinery [BR:
malc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QQG91_01125 (rpoC)
DNA repair and recombination proteins [BR:
malc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QQG91_01125 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
WIV51073
LinkDB
All DBs
Position
221929..226155
Genome browser
AA seq
1408 aa
AA seq
DB search
MNQELTNNPFNPLTPAKAFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLSYGQLMTEEEFLDAQDTYGMDAFT
ANIGAEAIREMLSMIDLEATAEQLREELKEATGELKPKKIIKRLKIVENFIESGNRPEWM
ILTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYTTIQRDGMKGEGMSFATLDEIEHAL
AAGEVHLHAKITARIKQIDDEGNEVIKRVETTPGRLRLGSLLPLNAKAPFELVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMSMGFKEAFRAGISFGKDDMVVPDAKWELVEETRE
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTEAMMSTISAEKRDENGAVKEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRSHDCGTDKAITAEAAVNDGEVIVSLAERVLGRV
SADDVLKPGTDEVIVAAGELIDERRADLIDAANVAKMRIRSPLTCEADDGVCAMCYGRDL
ARGTLVNQGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASAAGTVEFRNAS
IISNANGDQIVMGRNMVLAIIDENGEERAQHKVGYGSKVFLKDGASINRGDKMFEWDPYT
LPIIAEKGGKVRFVDLVNGIAVREETDDATGMTQRIVSDWRSVPRGSDLKPEIIVVGEDG
EPVRKDDGNPVTYPMSVDAILSVEDGQDIQAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRITIESSENADIKVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILAIMGVEALADYMINEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
IQDSGDTTLLKGETVDKVEFDEANEKAMARGGRPATGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATSKVRRIAQERDNVVLEARRE
EAEAAVALAAPSASQDMSFSDIPESRDE
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgaccaacaacccgtttaatccgcttacgccggcaaaagcttttgac
gagatcaaagtttcgcttgcctcgcccgagcgcattctttcgtggtcctacggcgaaatc
aaaaagccggaaaccatcaactatcgtacgttcaagcccgagcgtgacggtctcttctgt
gcgcgtatctttggcccgatcaaagactacgaatgcctttgcggcaaatacaagcgcatg
aagtaccgcggcgtcgtctgtgaaaagtgcggcgttgaagtaactctccagaaagtgcgc
cgcgagcgcatgggccacatcgagcttgctgctcctgtcgctcacatctggttcctcaag
tcgctcccgagccggatcggtctcatgctcgacatgaccctccgtgatctcgagcgtatt
ctctacttcgaaaactacgttgtgatcgagccgggtctcaccgacctgagctatggccag
ctgatgaccgaagaggaattcctcgacgctcaggacacctacggcatggacgccttcacc
gccaacatcggcgctgaagcgatccgcgaaatgctgtcgatgatcgatcttgaagccacc
gccgagcagctccgcgaggaactcaaggaagcaaccggcgaactcaagcccaagaagatc
atcaagcgtctcaagatcgtcgagaatttcattgaatccggcaaccgtccggaatggatg
atcctcaccgtgatccccgtgatcccgccggaactgcgtccgctcgttccgctggacggc
ggccgttttgcgacgtcggatctcaacgacctctatcgtcgtgtgatcaaccgtaacaac
cgtctcaagcgtctgatcgaacttcgtgcgcccgatatcatcgtgcgtaacgaaaagcgt
atgcttcaggaatccgttgatgcgctgttcgacaacggtcgtcgtggccgcgtcatcacc
ggcgcgaacaagcgtccgctcaagtcgctctctgacatgctcaagggtaagcagggtcgc
ttccgtcagaaccttctgggtaagcgcgtcgacttctccggccgttcggttatcgtaacg
ggtcctgaactcaagttgcaccagtgcggtcttcccaagaagatggcgctcgaactcttc
aagccgttcatctactcgcgtctcgaagccaaaggtctttcgagcactgtgaagcaggcg
aagaagcttgttgaaaaagagcgtcccgaagtttgggatatcctcgacgaagtgatccgc
gaacaccccgtcatgctgaaccgtgcaccgacgctgcaccgtctcggcattcaggcgttc
gaacccactctgatcgaaggcaaggcaatccagcttcacccgctcgtttgttcggcattc
aacgccgacttcgacggtgaccagatggctgtgcacgttccgctctcgctggaagcccag
cttgaagcacgcgtgctcatgatgtcgaccaacaacgttctttcgcccgcaaacggcgcg
ccgatcatcgttccttcgcaggatatgatcttgggtctgtactatacgaccatccagcgc
gacggcatgaaaggcgagggcatgtccttcgcgaccctcgacgagatcgagcacgcactt
gctgccggtgaagtccacctgcacgccaagatcactgcgcgcatcaagcagatcgacgac
gaagggaacgaggttatcaagcgcgttgaaaccacgccgggccgtctgcgtctcgggtcg
cttcttccgctcaacgccaaagctcctttcgagctcgtcaaccgtctgcttcgcaagaag
gaagtgcagcaggtcatcgacaccgtctaccgttattgcggtcagaaagagtcggtcatc
ttctgtgaccagatcatgtccatgggcttcaaagaagccttccgcgccggtatctccttc
ggcaaggacgacatggttgttccggatgccaagtgggaactcgttgaagagacccgcgag
caggtcaaggactttgaacagcagtacatggacggtctgatcactcagggcgaaaagtac
aacaaagtcgtcgacgcctggtcgaagtgtaacgacaaagtcaccgaagccatgatgtcc
accatctcggctgaaaagcgcgacgagaatggcgccgtcaaggaaccgaactcggtttac
atgatggctcactccggtgcgcgtggctcggtcacccagatgaagcagcttggcggtatg
cgcggtcttatggccaagccgtcgggcgagatcatcgaaacaccgatcatctcgaacttt
aaagaaggtctgaccgttctcgagtacttcaactcgacccacggtgcccgtaagggtctg
tcggataccgctctgaagaccgcgaactcgggttacctgacccgtcgtctcgtggacgtt
gctcaggactgcatcgtgcgttcgcatgattgtggaaccgacaaggcgattaccgcagaa
gccgctgtcaacgacggtgaagtcatcgtttcgctcgctgaacgcgttctgggccgtgtt
tcggctgatgacgtgctcaagccgggcaccgacgaggtcatcgttgccgccggtgaactg
atcgacgaacgtcgcgcagatctcatcgacgcagccaacgttgccaagatgcgcatccgc
agcccgctcacctgtgaggctgatgatggcgtctgcgcaatgtgctatggtcgtgacctc
gcacgcggtacgcttgtaaaccagggcgaagctgtcggtatcatcgccgcccagtcgatc
ggtgaacccggaacccagctgaccatgcgtacgttccacatcggcggcgttgcacagggt
ggccagcagtcgttcctcgaagcttcggcagcaggtacggtcgagttccggaacgcatcg
atcatctcgaacgccaacggcgatcagatcgttatgggccgtaacatggttctcgcgatc
atcgatgagaacggtgaagagcgcgctcagcacaaggtcggttacggctccaaggtcttc
ctcaaggatggcgcttcgatcaaccgcggcgacaagatgttcgaatgggacccctatacc
ctcccgatcatcgccgaaaagggcggtaaggttcgctttgtcgatctcgtgaacggcatc
gccgttcgtgaagagaccgacgatgcaacgggtatgacccagcgtatcgtatccgactgg
cgttctgtgccgcgcggtagcgatctcaagcccgagatcatcgttgtcggtgaagatggc
gagcctgtccgcaaggatgacggcaaccctgtgacctatccgatgtccgtagacgccatt
ctctcggttgaggacggtcaggacattcaggccggtgacgttgttgcccgtatcccgcgt
gaaggcgccaagaccaaggacatcaccggtggtttgccccgcgttgctgaactctttgaa
gcccgtcgtccgaaggaccacgctatcatcgcagagatcgatggctatgtccgcttcggc
aaggactacaagaacaagcgccgtatcacgatcgagtcgtccgagaatgcggacatcaag
gtcgagtacatggtgcccaaagggaagcacatccctgttcaggaaggcgacttcgtccag
aagggcgattacatcatggacggcaaccccgcgccgcatgacatccttgcgatcatgggt
gtagaagcgctggctgactacatgatcaacgaggttcaggacgtttaccgtcttcagggc
gtgaagattaacgataagcacatcgaagttatcgttcgccagatgctccagaagtgggaa
atccaggactcgggcgacaccacgctgctcaagggcgaaaccgttgacaaagtcgagttc
gacgaagccaacgaaaaggcaatggcacgcggcggccgtccggcaacgggcgaaccgatc
ctccttggtatcaccaaggcgtcgctccagacccgttcgttcatctcggctgcgtcgttc
caggaaaccacccgtgtgctcaccgaagcgtcggttcagggcaagcgcgacaaacttgtc
ggtctcaaagagaacgtcatcgtgggtcgtcttatccccgccggtacaggtggcgcgacg
agcaaggttcgccgcatcgcccaagagcgcgacaatgtcgttctcgaagcgcgccgcgaa
gaagcagaagccgcagtggctctcgctgctccgtcggcaagccaggatatgtctttctcg
gacattcccgagagccgcgacgagtaa
DBGET
integrated database retrieval system
