Marivivens sp. LCG002: QQG91_06230
Help
Entry
QQG91_06230 CDS
T10653
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
malc Marivivens sp. LCG002
Pathway
malc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
malc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QQG91_06230 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
malc03400
]
QQG91_06230 (mfd)
Enzymes [BR:
malc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QQG91_06230 (mfd)
DNA repair and recombination proteins [BR:
malc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QQG91_06230 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
AAA_16
UB2H
AAA_30
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WIV52034
LinkDB
All DBs
Position
1256846..1260286
Genome browser
AA seq
1146 aa
AA seq
DB search
MQSMNHITVSGAPEGFDARLILNEVAKSGGPVLHIARDDKRMAAMQAALEYFDPSMPVVV
FPAWDCLPYDRVSPNADISAARMATLAGLAHGMPEKFILLTTLNAATQKIPARSVLREAA
FTAHVGSRIDEEGLRRFLVRMGFTQSPTVMEPGDYAIRGGIIDIYSPGEAGPVRLDLFGD
TLDAARRFDPATQRTTEKLSVVELAPVSEVILDDAAITRFRQNYRIEFGAAGTDDPLYEA
VSAGRKHAGIEHWLGFFHDELETLFDYLPKATITLDDQMAASRDARWTSITDQYETRMFA
LKQKSRVDSVYKPAPPETLYLDDVAWDAKVGARRVLQFTALPQSLGPGVIDAGGRIGRDF
APERQQESISLFGSLTAHIKTKLDKGPVVIASYSEGARERLMGLLEDEGIGETIEITDHS
RVGKSGIHLTVWPLDHGFETKELTVISEQDVLGDRLIRQTRKKRRAENFLTETQSLSPGD
LVVHVDHGVGRFLGLEVVTAAGAAHECIALEYAENAKLYLPVENIELLSRFGHEEGLLDR
LGGGAWQAKKARLKERIRQMAERLIRVAAERHLRKAPVLTPPDGMWDQFLARFPYAETDD
QLQAIADVLDDLDSGSPMDRLICGDVGFGKTEVAIRAAFVAAMSGVQVALIAPTTLLARQ
HYKSFAERFRGFPINVAPLSRFVSAGDAARTREGMTNGQVDIVIGTHALLAKSVKFKNLG
LLIIDEEQHFGVQHKERLKQMRSNIHVLTLTATPIPRTLQLSLSGVRELSIIGTPPIDRL
AIRTYVSEFDTVTLREALLREHYRGGQSFFVVPRITDLAEIEDWVKREVPEVTYVIAHGQ
MAAGELDDRMNAFYDGKYDVLIATTIVESGLDIPTANTMIVHRADMFGLAQLYQIRGRVG
RSKIRAYAYLTTKPRAKLTPQAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGEEQS
GQMREVGFELYQQMLEDEIARIKSGGGEGMLGDDTGQWAPQINLGVPVLIPESYVPDLDV
RLGLYRRLSDLSTKVELEGFAAELIDRFGKLPKEVNTLLLIVRIKAMCKKAGISHLDGGP
KGATIRFHNDKFASPAGLVEFINDQKGLAKVKDNKIVIRRDWVKDADKIKGAFAIARDLA
EKVAGK
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccatgaaccatatcaccgtcagcggcgctcccgaagggtttgacgcccgtctc
attctcaacgaagtcgccaagtcgggcggacccgtgctccatatcgcgcgggacgacaag
cgtatggcggcgatgcaggcggcgcttgaatatttcgatccctcgatgcccgtcgtggtg
tttcctgcatgggactgcttgccttatgaccgcgtctctcccaatgccgatatttctgcg
gcgcggatggcgactttggcggggcttgcgcatgggatgcctgaaaagttcatccttctg
acaacgctcaacgcggcaacacagaaaatccccgcgcgctcggtcctgcgcgaggcggcc
tttaccgctcatgtggggagccgcatcgatgaagaggggctgcgccgtttcctcgtgcgt
atgggctttacccaaagcccgaccgtgatggagccgggggattacgcgatccgcggcggt
atcatcgacatctattcaccaggcgaagcggggcctgttcggcttgatctgttcggtgat
acactcgacgccgcgcgccgttttgatcccgccacgcagcgcaccacagaaaagctttcg
gtcgtcgaacttgcgcccgtttccgaggtgatcctcgacgatgcggccataacgcgtttc
cgtcagaactaccgcatcgaattcggggccgctggcaccgatgatcctctttacgaggcc
gtttctgccgggcgcaaacacgcagggatcgaacactggctcgggtttttccatgacgag
cttgaaaccttgttcgattatttgcccaaagcaacgatcacgctcgatgatcaaatggcg
gcaagccgcgatgcccgctggacgtcgatcaccgaccaatacgaaacccgtatgttcgca
ctcaagcaaaagagccgcgtggacagcgtttacaaacccgcaccgcccgaaacgctctat
cttgatgatgtggcatgggacgccaaggtcggtgcgcgccgcgttctgcaattcaccgct
ctgccgcaatctctcggtccgggcgtcatcgacgcaggcggtcgtatcggtcgcgatttc
gcccccgaacgccagcaagaaagcattagcctcttcggctccctcacggcccatatcaag
accaagctggacaagggacccgtcgtcatcgcctcctattccgagggcgcgcgagagcgc
ctcatgggacttctcgaggatgaaggcatcggcgagacgatcgagatcaccgatcattct
cgcgtcggaaaatcgggtatccatctgaccgtctggccgcttgaccacgggttcgaaacc
aaagaactcaccgtcatttcagagcaggacgtccttggcgaccgtttgatccgccagacc
cgcaaaaagcgccgcgccgagaatttccttaccgaaacccagagcctctctccgggggat
ctcgtcgtccacgtcgatcacggtgtgggtcgtttcctcgggctcgaggtggttactgcg
gccggcgcagcacatgaatgcattgcactggaatacgccgaaaacgccaagctgtatctg
cctgtcgagaatatcgaactcctctcgcgctttggccatgaagaggggcttctcgaccgt
ctgggcggcggcgcatggcaggcgaaaaaggcacggctcaaggaacgcatccgccagatg
gccgaacggcttatccgtgtcgcggccgagcgtcacctgcgcaaagcgcccgtgctcacg
ccgcctgacgggatgtgggaccaattccttgcgcgtttcccctatgccgagaccgatgac
cagcttcaggccatcgcggatgtgctcgacgatctggacagcggttcgccgatggatcgt
cttatttgcggcgacgtcggcttcggcaagaccgaggtcgcgatccgcgccgcctttgtt
gccgccatgtcgggggttcaggttgcgcttatcgcgccgaccacgctccttgcccgccag
cattacaagagctttgccgagcggttccgcggctttccgatcaatgtcgcgccgctctcg
cgctttgtgtcggcaggtgacgccgcccgcacccgcgagggcatgacgaacgggcaggtg
gatatcgtcatcggcacccatgccctccttgccaagtcggtgaagttcaagaacctcggc
cttctcatcatcgacgaggaacagcatttcggcgtccagcacaaagagcgcctcaagcag
atgcgctcgaacatccacgtgctgacgcttaccgcaacaccgatcccccgcacgctccag
ctttcgctctcgggcgtgcgcgaactttcgatcatcggcacaccgcccatcgaccgtctg
gcgatccgcacctatgtgtccgagttcgacaccgtcaccctacgcgaggcgcttctgcgc
gagcattatcgcggcgggcagtccttcttcgtggtgccgcgcatcaccgaccttgccgag
atcgaggattgggtcaaacgcgaagtccccgaggtcacttatgtcattgcccacgggcaa
atggcggcgggtgagcttgatgaccgcatgaacgccttttacgacggcaaatatgatgtg
ctcatcgcgaccacgattgtggaatccggtctcgacattccgaccgccaacacgatgatc
gtgcaccgtgcggatatgttcggccttgcccagctctatcagatcagggggcgcgtcggc
cgctcgaaaattcgcgcctatgcctatctgaccaccaaaccgcgtgccaaactcactccg
caagccgagaagcgtctgcgcgttctggggagcctcgacacccttggggcaggcttcacc
cttgccagtcaggaccttgatatccgcggggcagggaacctccttggcgaagagcagtcg
ggccagatgcgcgaggtcggtttcgagctttatcaacagatgctcgaggacgagatcgcc
cgcatcaagtcaggcggcggcgaaggcatgctgggcgacgacacgggccaatgggcgccg
cagatcaacctcggcgtgcccgttctcatccccgagagctatgtccccgatctcgacgtg
cgcctcgggctttatcgccgcctctcggatctgtcgaccaaggtggaactcgaaggcttt
gccgccgagctgatcgaccgcttcggtaaactccccaaagaggtcaacacgctcctcctc
atcgtgcggatcaaggccatgtgcaaaaaggcagggatcagccacctcgacggcggcccc
aaaggcgcgacgatccgcttccacaacgacaaattcgcatcccctgcgggtcttgtggag
ttcatcaacgaccagaagggcctcgccaaagtcaaagacaacaagatcgtcatccgccgc
gactgggtgaaggacgccgacaagatcaagggcgcgtttgcgattgcgcgggacttggcg
gagaaggtggcgggtaagtga
DBGET
integrated database retrieval system
