Marinovum algicola: MALG_02960
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Entry
MALG_02960 CDS
T03981
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit, predominant form
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
malg
Marinovum algicola
Pathway
malg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
malg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MALG_02960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
malg03021
]
MALG_02960
03400 DNA repair and recombination proteins [BR:
malg03400
]
MALG_02960
Enzymes [BR:
malg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MALG_02960
Transcription machinery [BR:
malg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MALG_02960
DNA repair and recombination proteins [BR:
malg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MALG_02960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
AKO98110
LinkDB
All DBs
Position
complement(3016156..3020394)
Genome browser
AA seq
1412 aa
AA seq
DB search
MNQELTNNPFNPVAPVKTFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPCAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMMTEEEFMDAQDAYGMDAFT
ANIGAEAIREMLAAIDLESEAETLRADLKEATGELKPKKIIKRLKVVESFLESGNRPEWM
VMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYLTIQRDGMKGEGMAFSSIEEVEHAL
GAGEVHLHAKITARVKQIDEDGLEVMKRYETTPGRLRLGGLLPLNAKAPFELVNQLLRKK
DVQRVIDTVYRYCGQKESVIFCDQIMSMGFKEAFKAGISFGKDDMVIPDTKWPIVEETRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTEAMMSTISAERHAEDGSVMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRLHDCETDRAITAEAAVNDGEIVSSLGERILGRV
AADDVLAPGTEDVVCKAGTLIDERMADTIEDLGVQKMRIRSPLTCEAEEGVCAMCYGRDL
ARGTMVNSGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFQEAGTDGVVAFEAAN
TLENALGETLVMGRNMKLVIQDEHGAERASFKLGYGTKLFVKEGQQVARGDKLFEWDPYT
LPIIAEKDGIARHVDLVNGVAVREETDDATGMTQKIVADWRAAPKGNELKPEIILIDGDG
EPVRNEAGNPITYPMSVDAILSVDDGVDVKAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRIAIEPADDSLEPVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILAIMGIEALANYMIDEVQDVYRLQGVKINDKHVEVIVRQMLQKWE
IQDSGDTTLLKGEHVDKAEFDAANEKALSKGGREAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTGGATQKVRRIAQDRDNVVIGARRE
EAEAAAALAAPSDDMVGGDAFTQPVMDEDSRD
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgaccaacaatccgttcaaccccgtcgccccggtcaagaccttcgac
gagatcaaggtgtctcttgcctcgcccgagcggatcctctcgtggtcctatggcgagatc
aagaagccggaaaccatcaactaccgcacgttcaagcccgagcgtgacgggttgttctgc
gcgcgtatctttggcccgatcaaggattacgaatgcctttgcggcaagtacaagcgcatg
aagtatcgcggcgtcgtctgcgagaaatgcggtgtcgaagtcacgctgcaaaaggtccgc
cgcgaacgcatgggccacattgagctggccgcgccctgcgcccatatctggttcctcaag
tcgctgccctcgcgcatcggcctgatgctggacatgacgctgcgtgatctggaacgcgtg
ctctacttcgagaactacgtggtgatcgaaccgggcctcaccgacctcacctacggtcag
atgatgaccgaagaagagttcatggacgcccaggacgcctatggcatggacgccttcacc
gccaacatcggcgccgaggcgatccgcgagatgctggccgccatcgacctcgagtccgag
gcggagaccctgcgcgccgatctgaaagaggcgacaggcgaactgaagcccaagaagatc
atcaagcgtctgaaggtcgtcgagagcttcctcgaatccggcaaccgcccggaatggatg
gtcatgaccgtcattccggtcatcccgccggaactgcgcccgctggtgccgctggacggt
ggccgctttgcgacctccgacctcaacgatctctatcgccgcgtgatcaaccggaacaac
cgcctcaagcggctgatcgagctgcgtgcgccggatatcattgtccgcaacgaaaagcgg
atgcttcaggaatcggtggatgcgctgttcgacaacggccgtcgcggccgcgtcatcacc
ggtgccaacaagcgtccgctgaaatcgctctcggacatgctcaagggcaagcagggccgc
ttccgtcagaaccttctggggaaacgggtcgacttctcgggccggtcggtcatcgtgacc
gggccggaactgaagctgcaccaatgtggtctgcccaagaagatggcgctcgagttgttc
aagccgttcatctattcgcggcttgaagccaagggtctgtcttcgaccgtcaagcaggcc
aagaagctggtcgagaaagagcgccccgaggtctgggacatcctcgacgaggtgatccgc
gagcacccggttctgctgaaccgtgcgccgacgctgcaccgtctgggcatccaggccttc
gagcccacgctgatcgaaggaaaggcgatccagctgcacccgctggtctgttcggctttc
aacgccgacttcgacggcgaccagatggccgttcacgtgcccctctcgctggaagcccag
ctcgaagcgcgcgtgctgatgatgtcgaccaacaacgtcctgtcgcccgccaacggcgcg
ccgatcatcgttccgtcgcaggatatgattctcggtctctactacctcaccatccagcgc
gatggcatgaagggcgagggcatggccttctcctcgatcgaggaagtcgagcacgcgctc
ggcgccggtgaagtgcatctgcacgccaagatcaccgcgcgcgtcaagcagatcgacgaa
gacggcctcgaggtgatgaagcgttacgagaccaccccgggccgcctgcggcttggcggt
ctgctgccgctgaatgccaaggcgcccttcgaactggtcaaccagcttctgcggaagaag
gacgtgcagcgcgtcatcgacaccgtctaccgctattgcggtcagaaagagtcggtgatc
ttctgcgaccagatcatgtcgatgggcttcaaggaagccttcaaggccggcatctccttc
ggcaaggacgacatggtcatccccgacaccaaatggccgatcgtcgaagagacgcgcgac
caggtgaaggacttcgaacagcagtacatggacggtctgatcacccagggtgagaagtac
aacaaggtcgtcgatgcctggtcgaagtgtaacgacaaggtcaccgaagcgatgatgtcg
accatctcggccgaacgtcacgccgaggatggctcggtcatggagccgaactcggtctac
atgatggcgcactcgggtgcccggggctcggtcacgcagatgaagcagctgggcgggatg
cgcggcctgatggccaagccgaacggcgacatcatcgagaccccgatcatctcgaacttc
aaggaaggtctgaccgttcttgaatacttcaactcgactcacggcgcgcggaaaggtctg
tcggacaccgctctgaagacggcgaactcgggctacctgacccgtcgtctggtggacgtg
gcgcaggattgcatcgtgcgtctgcacgattgcgaaaccgaccgggcgatcaccgcggaa
gcggcggtcaacgacggcgagatcgtgtcgtcgctgggcgagcgtatcctgggccgtgtc
gcggccgacgatgtgctggcccccggcaccgaggacgtggtctgcaaggcaggcaccctg
atcgacgagcgcatggccgacaccatcgaggatctgggggtgcagaagatgcgcatccgc
agcccgctgacctgtgaggccgaagagggcgtctgtgccatgtgctacggccgtgacctc
gcgcgcggcaccatggtcaactcgggcgaagcggtgggcatcatcgcggcgcagtcgatc
ggcgaacccggcacccagctgacgatgcggaccttccacatcggcggcgttgcccagggt
ggtcagcagtccttccaggaggcgggcaccgatggtgtcgtggccttcgaggcggccaac
acactggaaaacgcccttggcgagaccctggtgatgggccggaacatgaagctggtgatc
caggacgagcacggcgccgaacgggccagcttcaagctgggctacggcaccaagctgttt
gtcaaggaaggccagcaggtggcccgcggcgacaagctgttcgaatgggatccctatacc
ctgccgatcatcgccgagaaggacggtatcgcccgtcacgtcgacctggtgaacggtgtc
gccgtgcgcgaggagaccgacgatgccaccggcatgacccagaagatcgtcgccgactgg
cgtgcggctccgaagggcaacgagctcaagcccgagatcatcctgatcgatggcgacggc
gagccggtgcgcaacgaggcgggcaacccgatcacctatccgatgtcggtcgacgccatt
ctgtcggtcgatgacggtgtcgatgtgaaggccggtgacgtcgtggcgcgtattccgcgt
gaaggcgccaagaccaaggacatcaccggtggtctgccgcgtgtggccgaactcttcgaa
gcccggcgtcccaaggatcacgcgatcatcgccgagatcgacggctatgtgcgctttggc
aaggactacaagaacaagcgccgaatcgcgatcgaacccgccgacgacagcctggagccg
gtcgaatacatggtgcccaagggcaagcacattccggttcaggaaggtgacttcgtccag
aagggcgactacatcatggacggcaacccggcgccgcacgacatcctcgccatcatgggg
atcgaggctctggccaactacatgatcgacgaggtccaggacgtctatcgactgcaaggc
gtgaagatcaacgacaagcatgtcgaagtgatcgtgcggcagatgttgcagaagtgggaa
atccaggattcgggcgacaccacgctgctcaagggcgaacatgtggacaaggccgagttc
gacgccgccaatgaaaaggcgctgtcgaaaggcgggcgcgaggcgcagggcgaaccgatc
ctcttggggatcaccaaggcctcgcttcagacccggtcgttcatctcggcggcctccttc
caggagaccacccgcgttctcaccgaggcctcggtgcagggcaagaaggacaagctggtt
gggctcaaggagaacgtcatcgtcggccgcctgatcccggcgggcaccggtggcgcgacc
cagaaggtccgccgcattgcccaggaccgcgacaacgtggtgatcggcgcgcgccgcgag
gaagcggaagcggcagccgccctggcggcaccttcggacgacatggtggggggcgatgcc
tttacccagccggtgatggacgaagacagccgcgactga
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