Pseudoduganella albidiflava: EYF70_00350
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Entry
EYF70_00350 CDS
T05903
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mali
Pseudoduganella albidiflava
Pathway
mali00040
Pentose and glucuronate interconversions
mali01100
Metabolic pathways
mali02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
mali00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
EYF70_00350
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
EYF70_00350
Enzymes [BR:
mali01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
EYF70_00350
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
DUF5123
Motif
Other DBs
NCBI-ProteinID:
QBH99456
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Position
86388..88289
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AA seq
633 aa
AA seq
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METRRSAGNGAGTPCRAALGMVAAALLMQGCGGQAGGEAAAGQGGSVTMAAMARQDAAPQ
AAPAWNMDASLHAAAATGWASQGAGTTGGAGAPASNIYVVRNWAELNAALANTNSPTYAT
DPAAAKREPKIIRIVGTIYGTDLGNGRLADEAYYKSLNATAAKWDFNLYLQSLDTAFMAD
LNARVAQGDPEAIALRARISALSSARSTLRNLQKAQIQFIIPSNTTIVGVGRDARVVDGY
FSINATPNIIIRNLEFQAPQDLTPSWDGKSAWDSRYKAISVVTGKQLWIDHCTLSDGNPA
EEIVTINGVTSHVNRFDGLIDIEDSSDYVTLSYNIFKNHDKTNMVGGSGDGNGAKERDFN
RITFHNNVWDNIAQRAPRARFGRIHVYNNYYRGDTSATAKYRLGYFIGMGAESKILSESN
AFEITGPEAGAAKVMSNLNGYQFKDVGSWINGVPASAALEAAARAALENNWAKVVAAAAS
SGFTVGPYTNELGWTPTYDYRPGASFQEVKMHNLATAGSGKVAIDGANLDVTSSFSLLRS
GLAWNRITGKYSASITLTNTGGAALAGPFQLVLDQLPAGVALDNASGTRDGAPYITLAAD
AIAPGASVTVPLVYSNPGKLAISYTNAVYVGYF
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggagacacgacgtagtgcgggcaacggagcgggaacgccgtgccgggcggcgctgggc
atggtggccgcggcgctgttgatgcaggggtgcggcggccaggcgggcggcgaagccgcc
gcggggcagggcggcagcgtgacgatggcggcaatggcccggcaggatgcggcgccgcaa
gccgcgccggcatggaacatggatgccagcctgcatgccgccgcggccaccggctgggca
tcgcaaggcgcgggcaccacaggcggcgccggtgcgccggccagcaatatctatgtcgtg
cgcaactgggccgaactgaatgcggcgctggcgaacaccaacagccctacctatgccacc
gatcccgccgcggccaagcgggagccgaagatcatccggatcgtcggcaccatctacggc
accgacctgggcaacggcaggctggccgacgaggcctattacaagtccctcaacgccacc
gccgccaagtgggacttcaacctgtacctgcaaagcctggacacggccttcatggccgac
ctgaacgccagggtggcgcagggcgacccggaagcgatcgccctgcgcgcgcggatatcg
gcactgagctcggcgcgcagcacgctgcgcaacctccagaaggcgcagatccagttcatc
atcccgtccaacaccaccatcgtcggcgtgggccgcgatgccagggtggtcgatggctat
ttctcgatcaacgccacgcccaacatcatcatccgcaacctggaattccaggcgccgcag
gacctgacgcccagctgggacggcaagagcgcctgggattcccgctacaaggccatctcc
gtggtgaccggcaagcagctgtggatcgaccattgcacgctgagcgacggcaaccccgcc
gaggaaatcgtcaccatcaacggcgtcacgtcgcacgtcaaccgcttcgacggcctgatc
gacatcgaggacagcagcgactacgtcaccctgtcgtacaacatcttcaagaaccacgac
aagaccaatatggtgggcggttcgggcgacgggaacggcgccaaggaacgcgatttcaac
cgcatcaccttccataacaatgtgtgggacaacattgcccagcgcgcgccgcgcgcacgc
ttcggccgcatccacgtctacaacaattactaccggggcgacacctccgcgacagcgaaa
taccgcctcggctacttcatcggcatgggcgcggaatcgaagatcctgtccgaatcgaat
gcgttcgagatcaccggtccggaggctggcgccgcgaaagtcatgtcgaacctgaacggc
taccagttcaaggacgtgggctcgtggatcaatggcgtgcccgcctccgccgcgctggaa
gcggcagccagggcggcgctggagaataactgggccaaggtggtggccgcggcggccagc
agcggcttcacggtggggccctataccaatgagctgggctggacgcccacgtacgactac
cggccgggcgcttcgttccaggaggtcaagatgcacaacctggccactgccggctcgggc
aaggtggcgatcgacggggcgaacctggacgtcacgtcgagtttctcgctgctgcgttcg
ggcctcgcctggaaccgcatcaccggcaagtacagcgcctccatcaccctcaccaacacc
ggcggcgccgcgctggccggtccgttccagctggtgctggaccagctcccggccggtgtc
gccctcgacaatgccagcggcacccgcgacggcgcaccgtacattacgctcgcggccgac
gccatcgcccccggcgcctcggtcacggtaccgctggtctacagcaatcccggcaagctg
gccatcagctacaccaatgccgtctacgtcggctacttctga
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