Pseudoduganella albidiflava: EYF70_01145
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Entry
EYF70_01145 CDS
T05903
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
mali
Pseudoduganella albidiflava
Brite
KEGG Orthology (KO) [BR:
mali00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mali03016
]
EYF70_01145 (thpR)
Enzymes [BR:
mali01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
EYF70_01145 (thpR)
Transfer RNA biogenesis [BR:
mali03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
EYF70_01145 (thpR)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
QBH99603
LinkDB
All DBs
Position
complement(267467..268066)
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AA seq
199 aa
AA seq
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MIANEPEGRPNAGTTRKLFFALWPDEAARAALTALQAPVAGRRTPPAKLHLTLAFLGQVP
ADAVPALLAIRDRLAVPPLRLVIDCYGYFARPRIAWAGMTQVPAALVALHEELVRELEAA
GFSAATHGAFKPHVTLAREAKQAPPEVPAAPVEWTVDRAVLVESLPDGRYVPLERQPVSA
ITPAGPLADPPAPLLPPAS
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
atgatagcaaatgaacctgaaggccggccaaacgccggcaccacgcgcaagcttttcttt
gccctgtggccggatgaggcggcgcgcgccgcattgaccgcgctgcaggcacccgtcgcg
ggaaggcgcacgccgcccgccaagctgcacctgacactggccttcctcggccaggtaccg
gccgatgccgtgcctgcgctgctcgccatccgcgaccggctcgccgtaccgccgttgcgg
ctcgtgatcgactgctacggctacttcgcgcggccgcgcatcgcctgggccggcatgacg
caggtgccggccgcactcgtggcgctgcatgaggagctggtgcgggagctggaagcggcc
ggcttttccgccgccacgcatggcgcgttcaagccgcacgtgaccctggcgcgggaggcg
aaacaggcgccgcccgaggtgcccgcagccccggtcgagtggaccgtggaccgcgccgtg
ctggtggaatcgctgccggacgggcgctacgtgccgctggagcgccagccggtgtccgcc
attacgccggctggcccactggcagatccgccggcgcctcttcttccgccagcttcctga
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