Pseudoduganella albidiflava: EYF70_04855
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Entry
EYF70_04855 CDS
T05903
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mali
Pseudoduganella albidiflava
Brite
KEGG Orthology (KO) [BR:
mali00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mali03019
]
EYF70_04855 (hrpA)
Enzymes [BR:
mali01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EYF70_04855 (hrpA)
Messenger RNA biogenesis [BR:
mali03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EYF70_04855 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_19
AAA_22
nSTAND3
NACHT
T2SSE
nSTAND_NTPase5
AAA_30
SRP54
ResIII
TsaE
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QBI00256
UniProt:
A0A411WU17
LinkDB
All DBs
Position
1141416..1145576
Genome browser
AA seq
1386 aa
AA seq
DB search
MSEAIKQSPSSSSPKTNEARTPRRDDGRRGGAPREKATPEQGAAGEKRAPRQGGAREKPT
PEQLAAREAERLFRNPLPPITFPEDLPVSGRRGEIAEALSKHQVVIVSGETGSGKTTQLP
KICLELGRGQKGLIGHTQPRRIAASSTAKRIAQELGSPLGEHVGYKVRFNDTLHKGAYVK
LMTDGILLAETQTDPLLKGYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSAT
IDAERFARHFSQHGKPPVPVIEVSGRLYAVEVRYRPVEREPVRLPEGANAAKPQMRTAAA
AKEKRDLMDAILDGVDEVCRIGPGDVLVFLPGEREIRDAAEALRKHHPPHVEILPLFARL
SVEEQDRVFRTTNQRRIVLATNVAETSLTVPGIRYVVDAGLARVKRYSYRNKVEQLQVEP
VAQSAANQRAGRCGRVADGVCIRLYDEEDYNKRPKFTDPEILRSSLASVILRMKSLHLAD
VETFPFIEPPLARAIADGYQLLQELGAVDDDNRLTNLGRKLAKLPLDPRVGRMILAAQDF
TCLTEVLIVAAALSVQDPRDRPIEHQQAADQAHQKFADEKSEFLSYIKIWRWFEEAIEHK
KTNRQLQDNCRANFLSQVRLREWRDVHSQLLTLVKEQGWRMNETPATYEQVHMALLTGLL
GNVGFKMEDDPGYLGARGIKFNIWPGSSLGKKAGKWVMAAELVETTRLYARTIAKIEPEW
LEKIGAHLLRKSWGEPRWEKRPAQVTAAEKATLYGLTIYSQRRINYALHNPAEAREIFIR
DALVAGDYDTRAPFFAHNHRLVKEIENLEHKSRRQDVLVDDQLIEAFYDKLIPHDVVNGA
GFEAWYKKAAQAEPKILYLVKEDLMRHEAAGVTTELFPKKLLAAGVEMALTYHFEPGTVR
DGVTLHVPLYALNQLSRERCEWLVPGMLKEKVHLLLKSLPQKLRRHMVPLPEYAQKFCDR
IHEKQAFGRGDLVDAIIADIREQITITVLTSDFKPEQLPAHHFMNFKVIDEHGRQLDMGR
NLATLQAEYGIQARQSFQRMAENAPPASAASLAQLGGGRAEKGQDKGPDRGAKHGGIAGE
VKAGGMPGAAVPAPAATAPAPAAAHTNITSWSFGELPELLEIVQGKLTLIGFPALVDKGT
HCDLEVFDDPNVAARTHRIGLRRLFALQMKDQIKFVEKSIPNLQQMGMQFMSMGTQEELR
DQIIAKAIDIACLQDPLPLDAAAFNKRKDEGKSRLVLLVNEIARLVSQVLTEFHGLPKRL
QGINPQAAADMQEQLKGLVHKRFLLDTEFAQLAHFPRYLKAMNVRLEKLRTDPARDAKSM
ADWHQAAQPYLRVMREKSAGKNTDPKLVEYRWMLEELRVSLFAQELRTPMPVSVKRLFKV
WESMQR
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagccatcaagcagtccccttcctcttcttccccgaaaacgaacgaagcgcgt
accccgcgccgcgatgacggccgccgcggcggcgcgccacgggaaaaagcaacgccggag
cagggtgccgcgggcgaaaagcgcgcgccgaggcagggtggcgcgcgcgaaaaaccaacg
cccgagcagcttgccgcgcgcgaggccgaacggctgttccgcaatccgctgccgcccatc
acgttcccggaagacttgccggtgtcgggccggcggggcgagattgccgaggcattgtcg
aagcaccaggtcgtgatcgtctcgggcgagaccggttccggcaagaccacgcagctgccg
aagatctgcctggagctgggccgcgggcaaaagggcctgatcggccacacccagccgcgc
cgcatcgccgcttcctcgaccgccaagcggatcgcccaggaactgggctcgccgctgggc
gagcacgtgggctacaaggtgcgcttcaacgataccctgcacaagggcgcgtacgtgaag
ctgatgacggacggtatcctgctggccgaaacccagacagacccgctgctcaagggctac
gacacgatcatcatcgacgaggcgcacgaacgcagcctgaacatcgacttcctgctgggc
tacctgaagcagctgctgccgcgccggccggacctgaaggtgatcatcacgtccgccact
atcgatgccgagcgtttcgcccgccatttcagccagcacggcaagccgccggtgccggtg
atcgaggtctccgggcgcctgtatgccgtggaagtgcgctaccggccggtggagcgcgag
ccggtcaggttgccggaaggggcaaacgcggcgaaaccgcaaatgcgcacggccgccgcc
gcaaaggaaaagcgagacctgatggatgccatcctcgacggcgtcgacgaggtatgccgc
atcggccccggcgatgtgctggtgttcctgcccggcgagcgggagatccgcgatgcggcc
gaggcgctgcgcaagcaccatccgccgcacgtggaaatcctgccgctgttcgcccgcctg
tcggtggaggagcaggaccgcgtgttccgcaccacgaaccagcgcaggatcgtcctcgcc
accaacgtggccgagacgtcgctgacggtgccgggcatccgctacgtggtcgatgccggc
ctggcgcgcgtgaagcgctacagctaccgcaacaaggtcgagcagctacaggtcgaaccg
gtggcgcagtccgcggccaaccagcgcgccggccgttgcggccgcgtggccgatggcgtg
tgcatccggctgtacgacgaagaggattacaacaagcggccgaagtttaccgatccggaa
atcctgcgctcgtcgctggcatcggtcatcctgcggatgaagtccctgcacctggcggac
gtggagacgttcccgttcatcgaaccgccgctggcgcgcgcgatcgccgacggctaccag
ctgctgcaggaactgggcgccgtcgatgacgacaaccggctgacgaacctgggccgcaag
ctggccaagctgccgctcgatccgcgcgtggggcgcatgatcctggccgcgcaggacttc
acctgcctgaccgaagtgctgatcgtggcggccgcgctgtcggtgcaggacccgcgcgac
cggccgatcgagcaccagcaggcggccgaccaggcgcaccagaagttcgccgatgaaaag
tccgaattcctttcctacatcaagatctggcgctggttcgaggaagccatcgagcacaag
aagaccaatcgccagctgcaggacaactgccgtgccaacttcctgtcgcaggtgcggctg
cgcgagtggcgcgacgtgcattcccagctgctcacgctggtcaaggagcagggctggcgc
atgaacgaaacgccggccacctacgagcaggtgcacatggcgctgctcacgggcctgctg
ggcaacgtcggcttcaagatggaagacgatcccggctacctgggcgcgcgcggcatcaag
ttcaatatctggcccggttcctcgctgggcaagaaggccggcaagtgggtgatggcagcc
gaactggtggagaccacgcggctctacgcgcgcaccatcgcgaagatcgagccggagtgg
ctggaaaagatcggcgcgcacctgctgaggaaatcgtggggcgaaccgcgctgggaaaag
cgcccggcacaggtgacggcggccgagaaggccaccctgtacggcctgacgatctacagc
cagcgccgcatcaactatgcgctgcacaatccggccgaggcacgcgagatcttcatccgc
gacgcgctggtggccggcgactatgacacgcgcgcgccgttcttcgcccacaaccaccgg
ctggtgaaggaaatcgagaacctggaacacaagtcgcgccggcaggacgtgctggtggac
gaccagctgatcgaggcgttctacgacaagctgatcccgcacgacgtggtcaacggtgcc
ggtttcgaagcctggtacaagaaggccgcgcaggccgagccgaagatcctgtacctcgtc
aaggaagacctgatgcggcacgaggcggccggcgtgacgaccgagctgttcccgaagaag
ctgttggccgccggcgtggagatggcgctcacgtatcacttcgagccgggcacggtgcgc
gacggcgttacgctgcacgtgccgctgtatgcgctgaaccagctgtcgcgcgagcgctgc
gaatggctggtgccgggcatgctgaaggaaaaggtgcacctgctgctgaaatcgctgccg
caaaaactgcgccggcacatggtgccgctgcccgagtatgcgcagaagttctgcgaccgc
atccacgagaagcaggcgttcggccgcggcgacctggtcgacgcgatcatcgccgacatc
cgcgagcagatcacgatcacggtgctgacctccgacttcaagccggaacagctgccggcg
caccatttcatgaacttcaaggtgatcgacgagcatggccgccagctggacatgggccgc
aacctggccaccctgcaggcggaatacggcatccaggcgcggcagagtttccagaggatg
gcggaaaacgcgccgcccgcatccgccgcttcgctggcgcagctgggcggaggacgggcg
gagaagggacaggacaaggggccggacaggggcgcaaagcacggcggtatcgcgggcgag
gtgaaggcgggtggcatgccgggtgcggccgtgccggcaccggcagccaccgccccggca
ccggccgccgcgcatacgaacatcacgtcatggtcgttcggcgaactgcccgaactgctg
gagatcgtgcagggcaagctgaccctgatcggcttcccggcgctggtggacaagggcacg
cactgcgacctggaagtgttcgacgatccgaacgtggccgcgcgcacgcaccgcatcggc
ctgcgccgcctgttcgcgctgcagatgaaggaccagatcaagttcgtcgagaaaagcatc
ccgaacctgcagcagatgggcatgcagttcatgagcatgggcacgcaggaggaactgcgc
gaccagatcatcgccaaggcgatcgacatcgcctgcctgcaggatccgctgccgctcgat
gcggccgcgttcaacaagcgcaaggacgaaggcaagtcgcggctggtgctgctggtgaac
gagatcgcccggctggtgtcgcaggtgctgaccgagttccacggcttgccgaagcggctg
cagggcatcaacccgcaggccgcggccgacatgcaggagcagctgaaagggctggtgcac
aagcgcttcctgctcgataccgaattcgcgcagctggcgcatttcccgcgctacctgaag
gcgatgaacgtgcggctggaaaagctgcgcaccgatccggcacgcgatgcgaaatcgatg
gccgactggcaccaggcggcgcagccttacctgcgcgtgatgcgcgagaaatcggccggc
aagaataccgatccaaaactggtggagtatcgctggatgctggaggaattgcgcgtttcg
ctgttcgcgcaggagttgcgcacgccgatgccggtgtcggtcaagcgcttgtttaaagtg
tgggagtcgatgcagaggtag
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