Pseudoduganella albidiflava: EYF70_06070
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Entry
EYF70_06070 CDS
T05903
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mali
Pseudoduganella albidiflava
Brite
KEGG Orthology (KO) [BR:
mali00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mali03009
]
EYF70_06070 (rlmD)
Enzymes [BR:
mali01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EYF70_06070 (rlmD)
Ribosome biogenesis [BR:
mali03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EYF70_06070 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRM5-TYW2_MTfase
Methyltransf_31
RrnaAD
Methyltransf_15
Methyltransf_25
MTS
Cons_hypoth95
Methyltrans_SAM
TRAM
UPF0020
Methyltransf_11
CMAS
PDGF
Methyltransf_23
DOT1
Methyltr_RsmB-F
Methyltransf_32
PCMT
Motif
Other DBs
NCBI-ProteinID:
QBI00469
LinkDB
All DBs
Position
1420223..1421566
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AA seq
447 aa
AA seq
DB search
MQDNSIEIKSLDMDARGVGHMQDNEDGTPGKVVFVEGALPGERVSFEMLRKKKNWESGRV
TQIHRESAMRVQPKCVHFDYCGGCSMQHLEASAQVAIKQRVLEDNLWHLSKVKADVMMRP
LHGPTWGYRYRARLSSRYVAKKGTVLVGFHEKKSVFVADIQSCQILPKHVSDMMMPLRAL
IGSLSIFDKVPQIELAIGEDLTVLVMRNMVPLTADDEAKLKAFADEYDIQWWLQPKGPDT
AYPFYPLDKELHYLLPEFGIRMPFKPVDFTQVNHQINRVLVHKALRHLDVQPGERVADLF
CGIGNFTLPLATQAREVVGIEGSTALTERAQQNAVVNGVGDKTTFYCRNLFEVTKDDLIA
LGKFDRILVDPPRDGAMALSLALAELKESHPELLPKRIVYVSCSPSTLARDAGVLVHRAG
YVLSQAGVMNMFPHTSHVESMAVFDLA
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacaacagcatcgaaatcaaatcgctcgacatggacgcgcgtggcgtcggccac
atgcaggataacgaagacggcacgccgggcaaggtggtgttcgtggaaggcgcgctgcct
ggcgagcgcgtcagcttcgagatgctgcgcaagaaaaagaactgggagtcggggcgcgtt
acgcagatccaccgcgaatcggcgatgcgcgtgcagccgaaatgcgtgcacttcgactat
tgcggcggttgttcgatgcagcacctggaagcgtcggcgcaggtggcgatcaagcagcgc
gtcctggaagacaacctgtggcacctgtcgaaggtgaaggcggacgtgatgatgcggccc
ctgcatggcccgacctggggctaccgctaccgtgcgcgcctgtcgtcgcgctacgtggcg
aagaagggcaccgtgctggtcggcttccatgaaaagaagtccgtgttcgtggccgatatc
cagagctgccagatcctgccgaagcacgtgtcggacatgatgatgccgctgcgcgcgctg
atcggatcgctgtcgatcttcgacaaggtgccgcagatcgaactggcgatcggcgaagac
ctgacggtgctcgtgatgcgcaacatggtgccgctgaccgccgacgatgaagccaagctg
aaagccttcgccgacgagtacgacatccagtggtggctgcagccgaaaggcccggatacc
gcgtatccgttctacccgctggacaaggaactgcattacctgctgccggagttcggcatc
cgcatgccgttcaagccggtcgacttcacgcaggtgaaccaccagatcaaccgcgtgctg
gtgcacaaggcactgcgccacctcgacgtgcagccgggcgagcgcgtggccgacctgttc
tgcggcatcggcaacttcacgctgccgctggcgacgcaggcgcgcgaagtggtcggcatc
gaaggcagtaccgcgctgacggaacgggcgcagcagaacgccgtcgtcaacggtgtcggc
gacaagaccacgttctactgccgcaacctgttcgaagtaacgaaggacgacctgatcgcg
ctgggcaagttcgaccgcatcctcgtcgacccgccgcgcgacggcgccatggccctgtcg
ctggcgctggccgagctgaaggaaagccatccggaactgctgccgaagcggatcgtctac
gtgtcgtgcagcccgtcgacgctggcgcgggatgccggcgtgctggtgcaccgtgccggg
tacgtgctgtcgcaggcgggggtcatgaatatgtttccccacacgtcgcatgtggaatcg
atggcggtattcgacctcgcctga
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