Pseudoduganella albidiflava: EYF70_16920
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Entry
EYF70_16920 CDS
T05903
Name
(GenBank) hypothetical protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mali
Pseudoduganella albidiflava
Pathway
mali00040
Pentose and glucuronate interconversions
mali01100
Metabolic pathways
mali02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
mali00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
EYF70_16920
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
EYF70_16920
Enzymes [BR:
mali01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
EYF70_16920
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pectinesterase
Big_5
Big_2
Beta_helix
3keto-disac_hyd
Motif
Other DBs
NCBI-ProteinID:
QBI02333
LinkDB
All DBs
Position
complement(4113486..4117037)
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AA seq
1183 aa
AA seq
DB search
MRLLAFKAALCAAFVFGAAPGHGADPVDPARQGAPLDGWASQGGGTRGGAAAPSEQIYSV
TNRAQLLAAIHNGGVNAKIIKLAGTIDMSEGLPFTSSADQAARGAIRLKSNTTLIGAGPG
TGIVNGHIVLSGVSQVIIRNLKLVNPCDVGPVWDPTDGSTGNWNSAFDAIGISGSDHVWV
DHVSFTDAPVTDDLLPVENDHVKQCHDGALDITNGSDYVTVSYNVFEQHNKNNLVGGSDS
ATGDEGKLRVTFSNNVFRDVASRAPRVRFGQVHLFNNYYAGAKSHPVYPVSYAVGVGTAA
KILSNNNVFEVAGARVCADVVRDFSGAIAGAFQDKGSLLNAAALGSCGVAASAGWTPPYA
YSVRPVALVKANALAQAGGGKLATAVTGTGSTTIDTGPTLACPPSGLYFCDDFQGGGAAK
WDLLPVPGPNGSFRVQDEVAGSANKVLQYTAASTGGVLALIKPAALDKVPSGDYFVEARI
RPMTNGTTGNKQLYLVTRYVDAGNWYGGGLNVQNSTASTQVEIAKMFAGSLSRPKQVRKP
ISMDGPFYTVRFEMIGSTLTVYLDGENLGSVTDSAFAARGLVGLYTANKSFQVDDVRIGD
PALKPAQLTLDPAVTSFAAEAGDAPLQVTVNARAPDSTPDSYTAVSSNPAVAAVTMEGNV
ATITPVGGGTAKIVFTSGSDPLLTRTIDATIAPRFVQPTQTYPLDNATWPAAQADSEPVD
LSLKLVFDKPPVLGSGGTIRVFRKADDALVDVVRLTGETDTLGYPGQAQVRKVNTVPVTI
DGNAATIRLHGNKLEPGTEYYVAISDGVFTGTSLGGVPFAGIGRLGGWSFTTRAAVPSGD
SVTVDDDGAADFRTVQGALNYAMQYFGKADPVTIRVKNGAYRELLFLRGKDNVSIVGESR
DGVVIRYTNNDSLNSGTGASQGASTSGARGGRAIMLVEAADMLSLESLTFNNTTLRSPAI
SAQAETLYFNSDGGRLVAKNAAFLSEQDTLNLKGWSWFYRTLVAGNVDFIWGSSRAALFE
ESEIRSVGDSSNAANGGYVLQARVPTAADKGFVFLNSALTHGPGPGPSHGDVPNGATYLA
RSPGGTDSWDNIAFINCRMDRHVAAAGWAGLGVNNQPAPNPVTPDAAAGWREYGTTDLAG
TPLDLGARVGGFQLSASDVAAGFSSRAQVFAGFGGGAGWEPQP
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgcgacttcttgcattcaaggcggcgctgtgcgccgcattcgtcttcggcgccgcgccc
ggccatggcgccgatccggtcgacccggcccgccagggcgcgccgctggacggctgggcc
agccagggcggcggcacgcggggcggtgccgccgcgccgtccgaacagatctactcggtc
accaaccgcgcgcagctgctggcggccatccataacggcggcgtcaacgccaagatcatc
aagctggccggcaccatcgacatgagcgaaggcctgccgttcaccagcagcgccgaccag
gcggcacggggcgccatccgcctcaagagcaataccacgctgatcggcgccggtcccggt
accggcatcgtcaatggccatatcgtgctgtccggcgtgtcgcaggtcatcatccgcaac
ctcaagctggtcaatccctgcgacgtgggccccgtgtgggatcccaccgacggctccacc
ggcaactggaattccgccttcgacgcgatcggcatctcggggtccgaccatgtgtgggtc
gaccatgtcagcttcacggatgcgcccgtgacggacgacctgctgccggtcgagaatgac
cacgtgaagcagtgccacgacggcgcgctcgacatcaccaacggctccgactacgtgacc
gtgtcgtataacgtgttcgagcagcacaacaagaacaacctggtcggcggcagcgacagc
gccacgggcgatgaaggcaagctgcgcgtcaccttcagcaacaacgtgttccgcgacgtg
gccagccgcgcgccgcgggtgcgcttcggccaggtccacctgttcaacaattactacgcc
ggtgcgaagtcgcaccccgtgtacccggtcagctatgcggtgggcgtgggcacggcggcg
aagatcctgtcgaacaacaatgtgttcgaggtggccggtgcgcgcgtttgcgccgacgtg
gtccgcgacttttccggcgccatcgccggcgccttccaggacaagggctcgctgctgaac
gcggcggcgctgggcagctgcggtgtcgccgccagcgccggctggacgccgccgtatgcg
tacagcgtgcgcccggtggcgctggtgaaggccaacgcgctggcgcaggccggcggcggc
aagctggcgacggccgtcaccggcacgggcagcaccaccatcgacaccggcccgaccctg
gcctgcccgccgtccggcctgtacttctgcgatgacttccagggcggcggcgcagcgaag
tgggacttgctgccggtgccgggcccgaacggcagcttccgcgtgcaggacgaagtggcc
ggcagcgccaacaaggtgctgcagtacacggccgcctccaccggcggcgtgctggcgctg
atcaagccggcggcgctggacaaggtgccctcgggcgactacttcgtcgaagcgcgcatc
cggccgatgaccaacggcaccacgggcaacaagcagctgtacctggtgacccgttatgtc
gatgcgggcaactggtatggcggcggcctgaacgtgcagaacagcaccgccagcacgcag
gtcgagatcgcgaagatgttcgccgggtcgctgagccggccgaagcaggtgcgcaagccg
atctcgatggatgggccgttctacacggtgcgcttcgagatgatcggcagcacgctgacg
gtgtacctcgatggcgagaacctgggctcggttaccgacagcgcgttcgccgcgcgcggg
ctggtcggcctgtacacggccaataagtcgttccaggtcgacgacgtccggatcggcgac
ccggccctgaagcccgcccagttgacgctcgatcccgcggtgacgagcttcgccgccgaa
gcgggcgacgcgccgttgcaggtcacggtcaatgcgcgcgctcccgacagcacgccggac
agctacacggcggtatcgagcaatccggcggtggccgcggtgaccatggagggcaatgtc
gccaccatcaccccggtcggcggcggcacggcgaagatcgtcttcacgtccggctcggac
ccgctgctgacgcgcacgatcgatgccaccatcgcgccgcgcttcgtgcagcccacgcaa
acctacccgctcgacaacgccacctggccggccgcgcaggcggacagcgagccggtcgac
ctgtcgctcaagctggtgttcgacaagccgccggtgctgggcagcggcggcaccatccgc
gtgttccgcaaggccgacgacgcgctggtcgacgtggtgcggctgaccggcgaaaccgac
acgctgggctaccccggccaggcccaggtgcgcaaggtgaacacggtgccggtcacgatc
gacggcaatgcggcgaccatccggctgcacggcaacaagctcgaaccgggcaccgaatac
tacgtggcgatctcggatggcgtgtttaccggcacctcgctgggcggcgtgccgttcgcc
ggcattggccggctgggcggctggtcgtttaccacccgtgccgccgtgccgtcgggcgac
agcgtgacggtcgacgacgatggcgccgcggacttccgcacggtgcaaggggcgctgaac
tacgcgatgcagtatttcggcaaggccgatcccgtcaccatccgcgtgaagaacggcgcc
taccgcgagctgctgttcttgcgcggcaaggacaacgtcagcatcgtcggcgaaagccgc
gatggcgtggtgatccgctacaccaacaacgattcgctcaactcgggcaccggtgccagc
cagggcgccagcacgagtggcgcgcggggcgggcgggccatcatgctggtcgaggcggcc
gacatgctgagcctggagtcgctgacgttcaacaacacgaccctgcgttcgccggccatc
tcggcccaggccgaaacgctgtacttcaacagcgatggcggccgcctggtggcgaagaac
gccgccttcctcagcgagcaggacacgctgaacctgaagggctggtcatggttctaccgc
acgctggtggcgggcaatgtcgacttcatctggggcagcagccgcgccgcgctgttcgag
gaaagcgagatccgttcggtgggcgactccagcaatgccgccaacggcggctacgtgctg
caggcccgcgtgccgaccgccgccgacaagggcttcgtgttcctcaacagcgcgctgacg
cacggccccggtccggggccgtcgcatggcgacgtgcccaacggcgccacctacctggcg
cgcagcccgggcggtaccgacagttgggacaacatcgccttcatcaactgccgcatggac
cggcacgtggccgccgcgggctgggccggcctgggcgtcaacaaccagccggcgcccaac
cccgtgacgcccgatgccgccgcgggctggcgcgaatacggcaccaccgacctggccggc
acgccgctcgacctgggcgcgcgggtgggcggcttccagctgagcgccagcgacgtggcg
gcggggttctcctcgcgtgcgcaggtgtttgccgggttcggcggcggcgcggggtgggaa
ccgcagccgtga
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