Pseudoduganella albidiflava: EYF70_21910
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Entry
EYF70_21910 CDS
T05903
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
mali
Pseudoduganella albidiflava
Pathway
mali03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mali00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
EYF70_21910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mali03400
]
EYF70_21910
Enzymes [BR:
mali01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
EYF70_21910
DNA repair and recombination proteins [BR:
mali03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
EYF70_21910
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EYF70_21910
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EYF70_21910
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
TPR_25
Motif
Other DBs
NCBI-ProteinID:
QBI03194
LinkDB
All DBs
Position
5277620..5279065
Genome browser
AA seq
481 aa
AA seq
DB search
MSDHTFLWHDYETFGAVPRRDRPAQFAAIRTDADLNEIGEPVMLYCKPADDYLPDPQSCL
ITGITPQHALREGVPEHQFAATILDLFAEPGTIGVGYNTIRFDDEFTRFLFWRNLIDPYA
REWQNGCGRWDLLDVVRMCHALRPDGIEWPQGDNGKTSFKLELLTSVNNLAHEAAHDALS
DVRATIALARLIRDRQPRLWDFCLALRDKGRAADEMGLHLARELRKPFLHVSGMFPAERG
CLALVWPLGVHPTNKNEVLVWDCSHDPRELFTLDAETIRTRLFSRADALPEGVTRLPIKS
VHLNKSPMLVGNLKTLSADMARRWGIDLELALAHAQYAASGPDLSALWEQVFHRPPAEPA
DVDEDLYGGFIGKDDRRLLDSLRREAPHKLATMSPHFQDDRLAELLFRYRARNFPDTLSE
QEHEHWEQHRAARLLEGAGGARSVDQLFGEIDTLAQQADERGEEILGALYDYAEMIVPQS
Y
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaccacacctttctctggcacgactatgaaacgttcggggccgtgccgcgccgc
gatcgtcccgcgcaatttgccgccatccgcaccgatgccgacctgaacgagatcggcgaa
ccagtcatgctctactgcaagccggcggacgattacctgcccgacccgcagtcctgcctg
atcaccggcatcacgccccagcacgccttgcgcgaaggcgtgcccgagcaccagttcgcc
gccacgatcctcgatctgttcgcggagcccggcaccatcggcgtgggctacaacacgatc
cgcttcgacgacgaattcacccgcttcctgttctggcgcaacctcatcgatccttacgca
cgcgaatggcaaaacggttgcggccgctgggatctgctcgacgtggtgcgcatgtgccac
gccttgcggcccgacggcatcgagtggccacaaggcgataacggcaagaccagcttcaaa
cttgaattattgacatcagtcaacaatctggcgcatgaggcggcgcacgacgccctgtcc
gatgtgcgcgccacgatcgcgctggcgcggctgatccgcgacaggcagccgcgcttgtgg
gacttctgcctggccctgcgcgacaagggccgcgcggcggacgagatgggcctgcacctg
gcgcgcgaactgcgcaagccattcctgcacgtgtccggcatgttcccggcggaacggggt
tgcctggcgctggtatggccgctgggtgtgcacccgacgaacaagaacgaagtgctggtg
tgggattgcagccatgacccgcgcgaactgttcacgctcgacgcggaaaccatccgcacc
cggctgttcagccgtgccgacgcgctgccggaaggcgtgacgcgcctgcccatcaagagc
gtgcacctgaacaagtcgcccatgctggtgggtaacctgaagacgctgagcgcggacatg
gcccggcgctggggcatcgacctggaactggcgctggcgcacgcgcaatacgccgcgagc
gggcccgacctgtcagcgctgtgggaacaggtgtttcaccgcccaccggcggagccggcc
gatgtcgacgaagacctgtatggcggcttcatcggcaaggacgaccgccggctgctcgac
tcgctgcgccgcgaagcgccccacaagctggccacgatgtcgccgcatttccaggatgac
cggctggccgagctgctgttccgctaccgcgcccgcaacttccccgacacgctgtcggag
caggagcatgaacattgggaacagcaccgcgccgcgcggctgctggaaggcgccggcggc
gcccgcagcgtcgaccagctgttcggcgagatcgacacgctggcgcagcaagccgacgag
cgcggcgaggaaatcctgggcgcgctgtacgactacgccgagatgatcgtgccgcagtcg
tactag
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