Pseudoduganella albidiflava: EYF70_25575
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Entry
EYF70_25575 CDS
T05903
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mali
Pseudoduganella albidiflava
Pathway
mali03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mali00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EYF70_25575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mali03019
]
EYF70_25575
03009 Ribosome biogenesis [BR:
mali03009
]
EYF70_25575
Enzymes [BR:
mali01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EYF70_25575
Messenger RNA biogenesis [BR:
mali03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EYF70_25575
Ribosome biogenesis [BR:
mali03009
]
Prokaryotic type
rRNA helicases
EYF70_25575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
DbpA
Helicase_C
ResIII
CMS1
AAA_19
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
QBI03807
LinkDB
All DBs
Position
complement(6155608..6157830)
Genome browser
AA seq
740 aa
AA seq
DB search
MTATPLLFSDLNLSAPLLKVLSDVGYEAPSPIQAQTIPHLMANRDVLGTAQTGTGKTAAF
ALPILSRLDIRQNTPQALVLAPTRELAIQVAEAFQRYAANIPNFHVLPIYGGQSYGPQLS
ALRRGVHVVVGTPGRVIDHLDKGSLDLSKLKTLVLDEADEMLRMGFIDDVERILKETPGS
RQTALFSATMPSPIRRIANTYLRDPAEITVAAKTTTSENITQRYWLVSGMHKLDALTRIL
EAEPFDGMIIFNRTKLGTEELAERLCARGFSAAAINGDMQQAARERTIGQLKEGKIDILV
ATDVAARGLDVERISHVVNYDVPYDAESYTHRIGRTGRAGRSGEAILFITPRERNLLKTI
ERATRQPIKQMELPTLQAVNDVRIARFKDQITETLAAGGLEQFQSLVEEYEREHDVPASE
IAAALAMMARGNAPLLLDKKAEKGWHEDGRPAAPQREERSPRGDRGDRFERPERGERPAY
PKKERIAREPEPGMATYRIEVGYEDGVKPGNIVGAIANEGGVDSKFIGRIEIFEDYTVLD
MPADLAPDVLDTLTQVRVAGRPMRIRRDGEPAAAPAQAAAPAAKPAPKAKAEREERPAAP
KAPREERAAAPKGLDAVVADAVSEDEAPKKKKRERAQDGLAMRAYRIEVGTKHEATPSNI
VGAIANESGLEARYIGRIEIFEDHTVLEMPDGMPDEIFKHLGKVWVGGQQLKISKADAMP
PLSGKHTPPKKPAAKPKAKR
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgactgccacaccccttctgttttccgatctgaacctgtccgctccgctgctcaaagtc
ttgagcgacgtaggctatgaggcgccttcgccgatccaggcgcagacgattccccacctg
atggccaaccgcgacgtgctcggcacggcgcaaaccggcaccggcaagaccgccgcgttc
gcgctgccgatcctgtcgcggctcgacatccgccagaacacgccgcaggccctggtgctg
gcaccgacccgcgaactggcgatccaggtggccgaagcattccagcgctatgccgccaac
atcccgaatttccacgtgctgccgatctacggcgggcaaagctacggtccgcagctgtcc
gcgctgcgccgcggcgtgcacgtcgtcgtcggcacgccggggcgcgtgatcgatcacctg
gataaaggctcgctggacctgtcgaagctgaaaacgctggtgctcgacgaggccgacgag
atgctgcgcatgggcttcatcgacgacgtcgagcgcatcctgaaggaaacgccggggtcg
cgccagaccgcgctgttctcggccacgatgccttcgccgatccgccgcatcgccaacacc
tacctgcgcgacccggccgaaatcacggtggccgcgaagaccaccacctccgagaacatc
acccagcgctactggctggtgtccggcatgcacaagctcgacgcgctgacccgcatcctg
gaagcggagccgttcgacggcatgatcatcttcaaccgtaccaagctgggcaccgaagaa
ctggccgagcgcctgtgcgcccgcggcttctcggccgccgccatcaatggcgacatgcag
caggccgcgcgcgagcgcaccatcggccagctcaaggaaggcaagatcgacatcctggtg
gccaccgacgtggccgcgcgcgggctggacgtggagcgtatcagccacgtcgtcaactac
gacgtgccgtacgacgccgaaagctacacccaccggatcggccgtaccggccgcgccggc
cgcagcggcgaggcgatcctgttcatcacgccgcgcgagcgcaacctgctgaagaccatc
gaacgcgccacgcgccagccgatcaagcagatggagctgcccacgctgcaggccgtaaac
gacgtgcgcatcgcgcgcttcaaggaccagatcacggaaacgctggccgccggcggcctg
gagcagttccagtcgctggtcgaggaatacgagcgcgagcacgacgtgccggccagtgaa
atcgccgccgcgctggcgatgatggcgcgcgggaatgcgccgctgctgctcgacaagaag
gccgagaagggctggcacgaggatggccgtccggccgctccgcagcgcgaggagcgcagc
ccacgcggcgaccgcggcgaccgcttcgagcggcccgaacgtggcgagcgcccggcgtat
ccgaagaaggagcgcatcgcccgcgagccggagccgggcatggccacgtaccgcatcgaa
gtgggctacgaggatggcgtcaagccgggcaacatcgtgggcgcgatcgccaacgaaggc
ggcgtcgactccaagttcatcggccgcatcgagatcttcgaggattacacggtgctcgac
atgcccgccgacctggcaccggacgtgctggataccctgacccaggtgcgcgtggcgggc
cggccgatgcgcatccgccgcgatggcgagcctgccgcggcaccggcccaggctgccgcc
ccggcagcgaaacccgcgcccaaagcgaaagcggagcgcgaggagcggccggcggcaccg
aaggccccgcgcgaggaacgggctgccgcaccgaaaggcctggatgcggtggtggccgat
gccgtcagcgaggacgaagccccgaagaaaaagaaacgcgagcgggcgcaggacggcctg
gccatgcgcgcctaccggatcgaggtcggcacgaaacatgaagccacgccgtcgaacatc
gtcggcgcgatcgccaatgaaagcgggctggaagcgcgctacatcggccgcatcgagatc
ttcgaagaccacaccgtgctggaaatgccggacgggatgccggacgagatcttcaagcac
ctgggcaaggtctgggtcggcggccagcagctgaagatcagcaaggccgatgcgatgccg
ccgctgtccggcaagcacaccccgccgaaaaagccggccgccaagccaaaagcgaagcgc
tga
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