Pseudoduganella albidiflava: EYF70_27030
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Entry
EYF70_27030 CDS
T05903
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mali
Pseudoduganella albidiflava
Pathway
mali03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mali00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EYF70_27030 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mali03021
]
EYF70_27030 (rpoC)
03400 DNA repair and recombination proteins [BR:
mali03400
]
EYF70_27030 (rpoC)
Enzymes [BR:
mali01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EYF70_27030 (rpoC)
Transcription machinery [BR:
mali03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EYF70_27030 (rpoC)
DNA repair and recombination proteins [BR:
mali03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EYF70_27030 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Myosin_VII_N
PYNP_C
Motif
Other DBs
NCBI-ProteinID:
QBI04064
UniProt:
A0A411X579
LinkDB
All DBs
Position
complement(6525777..6530024)
Genome browser
AA seq
1415 aa
AA seq
DB search
MKALLDLFKQVQTNETFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFTAFM
GAEGIRELLRSIDIHRDAETLRVELKESKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEQQEPVVWDILEDVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINAKGEGMLFPDVSEVIRAYDNK
EVELATRITVRIVENPRDPATGEFVRTVTRYETTVGRAILSEILPKGLPFSVLNRPLKKK
EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPLEKKTLIATAES
EVKQIEQQYASGLVTAGERYNKVVDIWGKTSDEVGKAMMDQLKVEDVVKRDGTSTTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGTLMKAMVEGGEVIEALRDRI
LGRVANNDVVNPETQETVYEAGTLLDEDMVEDIERMGIDEVKVRTPLTCDTRYGLCAKCY
GRDLGRGQLVNTGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR
FTATMRYVTNGKGAQIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGMTIKAGVPLA
TWDPLTRPIITEYAGTVRFENVEEGVTVARQVDEVTGLATLVVIDAKRRGSLTKTVRPQV
KLLNDDGAEVKIAGTEHAVAIGFQVGALIMVKDGQQVSVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQIQNAGDTDYIVGEQVERSELLEENDKMNAAAKLPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPGGTGLAFHRARREKEVWEAEE
RNALLQAERQAQAGAELEALDAAPAEQHHHEGGEG
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccctgctcgatttattcaagcaagtacagacgaacgagaccttcgacgcgatc
aagatcggtctcgcctcgcctgaaaaaatccgttcgtggtcctacggcgaagtcaagaag
ccggaaaccatcaactaccgtaccttcaagcccgagcgggatggcctgttctgcgccaag
atctttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgaaaagtgcggcgtggaagtcacgctggccaaggtgcgccgcgag
cgcatgggccacatcgaactggcttcgccggtcgcccacatctggttcctgaaatcgctg
ccgtcgcgcctgggcatggtcctggacatgacgctgcgcgatatcgaacgcgtgctgtac
ttcgaagcatatgtcgtgaccgatccgggcatgacgccgctgaagaagtgccagatcatg
tcggaagacgactacgccgccaagtacgaagagtacggcgacgacttcaccgccttcatg
ggtgccgagggcatccgcgaactgctgcgctcgatcgacatccaccgcgatgccgaaacg
ctgcgcgtggaactgaaggaatcgaagtccgaagcgaagatcaagaagtacgccaaacgc
ctgaaagtgctggaagcgttccagcgttccggcatcaagccggactggatgatcatggaa
gtgctgccggtgctgccgccggaactgcgtccgctggtcccgctggatggcggccgtttc
gccacgtccgacctgaacgacctgtaccgccgcgtcatcaaccgtaataaccgcctgaag
cgcctgatggaactgcgcgcaccggaaatcattacgcgtaacgaaaagcgcatgctgcag
gaagcagtggactcgctgctggacaacggccgtcgcggtaaagcgatgaccggcgccaac
aagcgtccgctgaagtcgctggctgaaatgatcaagggcaagggcggccgtttccgccag
aacttgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggtccgcag
ctgaaactgcaccagtgcggcctgccgaagctgatggccctggaactgttcaagccgttc
atcttcaacaagctggaactgatgggtctcgccaccaccatcaaggccgccaagaagctg
gtcgagcagcaagagccggtcgtctgggacatcctggaagacgtgatccgcgaacacccg
atcatgctgaaccgtgcgccgacgctgcaccgcctgggtatccaggcattcgagcctgta
ctgatcgaaggcaaggccatccagctgcacccgctggtctgcgccgcgttcaacgccgac
ttcgacggtgaccagatggcagtccacgtgccgctgtcgatcgaggcacagatggaagcg
cgcacgctgatgctggcgtcgaacaacatcctgttcccgtcgaacggcgaaccgtcgatc
gtgccgtcccaggatatcgtgctgggtctgtactacgcgacccgcgaggcgatcaacgcc
aagggcgaaggcatgctgttcccggacgtgtcggaagtgatccgcgcgtacgacaacaag
gaagtcgagctggctacccgcatcaccgtgcgtatcgtcgagaatccacgcgatccggcg
acgggcgagttcgtccgtaccgtcacgcgttatgaaacgacggtcggccgcgccatcctg
tctgagatcctgccgaaaggcctgccgttcagcgtgctgaaccgcccgctgaagaagaag
gaaatctcgaagctgatcaacacgtcgttccgcaagtgcggcctgcgcgccaccgtggtc
ttcgccgaccagctgatgcagtcgggcttccgcctggcgacccgcgccggtatctcgatc
tgcgtggacgacatgctggtgccgctggagaagaagacgctgatcgcgaccgccgagtcg
gaagtgaagcagatcgaacagcagtacgcttccggtctggtgaccgcgggcgagcgctac
aacaaggtcgtcgacatctggggcaagacctcggacgaagtcggcaaggcgatgatggac
cagctgaaggtggaagacgtcgtcaagcgcgacggcaccagcaccacgcaggaatcgttc
aacgcgatttacatgatggccgactcgggcgcccgcggttccgcagcgcagattcgccag
ctggccggtatgcgcggcctgatggcgaaaccggacggttccattatcgaaacgccgatt
accgcgaacttccgcgaaggcctgaacgttctgcagtacttcatctcgacccacggtgct
cgtaaaggcctggccgatacggcactgaagacggcaaactcgggttacctgacgcgccgc
ctggtcgacgtgacgcaggatctggtcgtgatcgaagacgattgcggcacctcgaacggc
acgctgatgaaggcgatggtcgaaggcggtgaagtcatcgaggcactgcgcgaccgtatc
ctgggccgcgtggcgaacaacgacgtggtcaatcctgaaacccaggaaaccgtgtatgaa
gccggcacgctgctggacgaagacatggtcgaagacatcgaacgcatgggcatcgacgaa
gtcaaggtccgcacgccgctgacctgcgacacccgttacggcctgtgcgcgaagtgctac
ggccgcgacctgggccgtggccagctggtcaacaccggcgaagccgtcggtgtggtggcg
gcacagtcgatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggt
gcggcatcgcgtgcagccgtggcctcgtccgtcgaagccaagtcgaacggcaccgtgcgc
ttcaccgccacgatgcgttacgtcaccaacggcaagggcgcccagatcgtcatttcgcgt
tccggcgaagtgctgatcacggacgaccatggccgtgagcgcgaacgccacaaggtgccg
tacggcgcgaccctgatcgtcaaggatggcatgacgatcaaggccggcgtgccgctggcg
acgtgggatccgctgacccgtccgatcattaccgaatacgccggtaccgtgcgtttcgag
aatgtcgaagaaggcgtcaccgtggcccgccaggtggacgaagtgaccggtctggcaacg
ctcgtcgtgatcgacgcgaagcgccgcggttcgctgacgaagaccgtgcgtccgcaagtg
aaactgctgaacgacgacggcgcggaagtgaagatcgccggcaccgaacacgccgtggcg
atcggcttccaggtcggcgcgctgatcatggtgaaggatggccagcaggtgtcggtgggt
gaagtgctggcacgtatcccgaccgaatcgcagaagacccgcgacattaccggtggtctg
ccgcgcgttgccgaactgttcgaagcacgttcgccgaaagacgccggcatgctggcggaa
gtcaccggtacggtggcgttcggtaaggagacgaaaggcaagcagcgcctggaaatcacc
gacatggacggcaacaagcacgagttcctgatcacgaaggacaagcaggtgctggtgcac
gacggccaggtggtgaacaagggcgagatgatcgtggacggcccggccgatccgcaggac
atcctgcgcctgctgggcatcgaagccctggcccgctacatcgtcgacgaagtgcaggac
gtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccag
atgctgcgccgcgtgcagatccagaacgccggcgacaccgactacatcgtcggcgagcag
gtggagcgttcggagctgctggaagagaacgacaagatgaatgccgcggcgaagctgccg
gccacgtatgaaaacgtgctgctgggtattaccaaggcatcgctgtcgaccgactccttc
atctcggccgcatcgttccaggaaaccacccgcgtgctgaccgaagccgcgatcatgggc
aagcgcgatggcctgcgcggcctgaaggaaaacgtgatcgtcggccgcctgatccctggc
ggtacgggtctggccttccaccgcgcccgccgcgagaaggaagtgtgggaagcggaagag
cgcaacgcgctgctgcaagccgagcgtcaagcgcaggctggtgcggagctggaagcgctg
gatgctgctcctgcggaacagcaccaccacgagggcggcgaaggctga
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integrated database retrieval system
