Microcella alkaliphila: MalAC0309_0468
Help
Entry
MalAC0309_0468 CDS
T05359
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
malk
Microcella alkaliphila
Pathway
malk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
malk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MalAC0309_0468 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
malk03021
]
MalAC0309_0468 (rpoC)
03400 DNA repair and recombination proteins [BR:
malk03400
]
MalAC0309_0468 (rpoC)
Enzymes [BR:
malk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MalAC0309_0468 (rpoC)
Transcription machinery [BR:
malk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MalAC0309_0468 (rpoC)
DNA repair and recombination proteins [BR:
malk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MalAC0309_0468 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BAU31340
UniProt:
A0A0U5BL85
LinkDB
All DBs
Position
489436..493302
Genome browser
AA seq
1288 aa
AA seq
DB search
MLDATTFDYLQIGLATADDIRKWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSAVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISIDEEGRHSDLPGLENEMRLEIQTLEKQRDAGIAKRLEQLEGE
LAALEAEGAKADQKRKTKDAGEKEMAQLRKSFDEQISQLERVWEDFRTLKVGDLKPEDAV
FQELQDRYGLYFEAHMGAEAIKRRLETFDLAAESELLHEQIAGGKGQKKIRAIKRLKVVN
SFLQTGTSPAAMVLEAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKIMALELFKPFVIKRLIDLGHAQNIKSAKRMVERSR
PQVWDVLEEIIRERPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTVPTQDMIIGLHHLTTVREGAAGEGR
AFTNTSEAIMAMDSGALDLNATVRIRLTGEKYNGRELKETTLGRALFNDLLPEDFPFVDR
VADKGTISQIVNDLAERYPKTIVAATLDKMKDAGFYWATRSGVTVALSDVVTPPKKKEIV
AEYEKKAAKIQAQFDKGLTTDDERRRELVALWSEGTKAVNEAMRENIPTDNTINRMVTSG
ARGNWLQVGNIAGMRGLVSNPRGEIIARPIINSYREGLSVAEYFIATHGARKGLADTALR
TADSGYLTRRLVDVAQDVIIREDDCGTSKGLDFEIAHEVDGQWVRDDNVENLVFARTLAA
DAVDAKGTVVAEAGVDVGDVLITELVTAGVGSIKVRSVLTCESAVGVCAACYGRSLATGQ
RVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVTELFEARTPKGASP
IAESAGRITIDDSQAQRRIILTPDNGDEEVVYPVTKRAALLVEDGQHVELGQQLLEGPVD
PKEVLRVKGVRAVQQHLVEGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTVVDHGETELLP
GELVDRSRYNSLNREALSEGKKTASARQEVMGITKASLATESWLSAASFQETTRVLTQAA
MEGKRDPLLGLKENVIIGKLIPAGTGLAAYRNVSVDATEEAKAERYPNRIFADDSAFSEA
DLSFVDFDSFSSDEFTGGSNNTSGGTYS
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgcaactactttcgactacctgcagatcggcttggcgaccgccgacgacatc
cgcaaatggtcgtacggcgaggtcaagaagccggagaccatcaactaccgcaccctgaag
cccgaaaaggatggccttttcggcgagcagatcttcgggccctcccgcgactgggagtgc
tcgtgcggtaagtacaagcgcgttcgcttcaagggcatcgtgtgtgagcgatgcggcgtg
gaggtcaccaagtcggccgtccgccgtgagcgcatgggccacatcgagctggccgccccg
gtcacgcacatttggtacttcaagggtgtgcccagccgcctcggctacctgctcgacatg
gcgccgaaagacctcgagaaggtcatctacttcgccgcctacatggtgatctcgatcgac
gaggaggggcgtcactccgacctgccgggcctcgagaacgaaatgcgtctcgagatccag
acgctcgagaagcagcgggacgccggcatcgccaagcgcctcgagcagctcgagggcgaa
ctggccgcgctcgaggccgaaggcgccaaggctgaccagaagcgcaagacgaaggatgcc
ggcgagaaggaaatggcgcagctgcgcaagtccttcgacgagcagatctcgcagctcgag
cgcgtgtgggaagacttccgcaccctgaaggtcggcgacctgaagcccgaagacgccgtc
ttccaggagctgcaggaccgctacggcctgtacttcgaggcgcacatgggcgctgaggcg
atcaagcgtcgcctcgagaccttcgacctggcggccgagagcgagctgctgcacgagcag
atcgccggcggcaagggccagaagaagatccgcgccatcaagcgactgaaggtcgtcaac
tcgttcctgcagaccggcacctcgccggccgcaatggtgctggaagccgttccggtcatc
ccgccggagctgcgccccatggtgcagctcgacggtggccgcttcgcgaccagcgacctg
aacgacctgtaccgccgtgtgatcaaccgcaacaaccgtctgcgtcgtctgctcgacctc
ggggcccccgagatcatcgtgaacaacgaaaagcgcatgctgcaggaggccgttgacgca
ctgttcgacaacggtcgacgtggtcgcccggtcaccggtaccggcaaccgcgccctcaag
tcgctgagcgacatgctgaagggtaagcagggtcgattccgtcagaacctgctcggtaag
cgcgtcgactactcgggccgttcggtcatcgtcgttggcccgcagctgaagctgcaccag
tgtggtctgccgaagatcatggcgctcgagctgttcaagccgttcgtcatcaagcgtctg
atcgacctgggccacgcccagaacatcaagagcgccaagcgcatggtcgagcggtcgcgc
ccgcaggtgtgggacgtgctcgaggagatcatccgcgagcgtcccgtcatgctgaaccgt
gcgcccaccctgcaccgtctcggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccagcttcacccgctcgtgtgtgcggcgttcaacgccgacttcgacggcgaccag
atggccgtgcacctgccgctgtcggttgaggctcaggccgaggcgcgcatcctcatgctt
gcgtcgaacaacatcctgaagccgtccgacggccggccggtgacggttccgacgcaggac
atgatcatcggtctgcaccacctcacgaccgttcgtgagggtgctgccggcgagggtcgc
gcgttcaccaacacgtccgaggcgatcatggccatggattcgggcgcgctcgacctgaac
gcgaccgtgcgcatccgtctgaccggcgagaagtacaacggccgcgagctgaaggagacg
accctcggtcgtgccctcttcaacgacctgctgccggaggacttcccgttcgtcgaccgg
gttgccgacaagggcacgatctcgcagatcgtgaacgacctcgccgagcgctacccgaag
acgatcgttgccgcgacgctcgacaagatgaaggacgccggcttctactgggccacgcgc
tcgggagtcaccgtcgccctcagcgacgtcgtgacgccgccgaagaagaaggagatcgtc
gccgagtacgagaagaaggcggcgaagatccaggcgcagttcgacaagggtctgaccacc
gacgacgagcgccgccgcgaactggtcgcgctctggagcgagggcaccaaggccgtcaac
gaggccatgcgcgagaacatcccgaccgacaacaccatcaaccgcatggtcacctctggt
gcccgcggtaactggctgcaggtcggaaacatcgccggtatgcgcggtctcgtgtcgaac
ccgcgcggtgagatcatcgcccgcccgatcatcaactcgtaccgcgagggtctgtcggtc
gccgagtacttcatcgccacccacggtgcgcgtaagggtctcgccgacaccgctctgcgg
acggccgactcgggctacctgacgcggcgactcgttgacgtcgcccaggacgtcatcatc
cgcgaagacgactgtggcacctcgaagggtctcgacttcgagatcgcgcacgaggtcgac
ggtcagtgggtgcgcgacgacaacgtcgagaacctcgtgttcgctcgcacgctcgccgct
gacgcggtggatgcgaagggcaccgtggtcgcggaggccggcgttgacgtcggcgacgtg
ctcatcaccgagctcgtcaccgcgggcgtcggctcgatcaaggttcgctcggtcctgacc
tgtgagagcgccgtcggcgtctgcgcggcctgctacggccgttcgctcgcgaccggtcag
cgcgtcgacctcggtgaggccgtcggcatcatcgcggcgcagtcgatcggtgagcccgga
acccagctgacgatgcgtaccttccacaccggtggttcggcgtcggccgacgacatcacg
cagggtctgccccgcgtgaccgagctgttcgaggcccgcaccccgaagggtgcgagcccg
atcgccgagagcgccggtcgcatcacgatcgacgactcgcaggcgcagcgtcgcatcatc
ctcacgcccgacaacggcgacgaggaagtggtgtacccggtcacgaagcgtgccgccctc
ctcgtcgaggacggtcagcacgtcgagctcggccagcagctgctggaaggcccggtcgac
ccgaaggaggtgctgcgcgtcaagggcgtgcgcgccgtgcagcagcacctcgtcgagggc
gtgcagggcgtctaccgttcgcagggtgtgccgattcacgacaagcacatcgaggtcatc
gttcgccagatgctgcgcaaggtcaccgtggtcgaccacggcgagaccgagctgctgccg
ggtgagctcgtcgaccgctcgcggtacaactcgttgaaccgcgaggcgctgtcggagggc
aagaagaccgcgtcggctcgtcaggaggtcatgggtatcaccaaggcctcactcgcgacc
gagtcgtggctgtcggccgcatccttccaggagacgacccgcgtgctcacgcaggccgcg
atggagggcaagcgcgacccgctgctcggcctgaaggagaacgtgatcatcggaaagctg
atcccggccggtaccggtcttgcggcctaccgcaacgtgtcggtcgacgcgacggaggag
gcgaaggcggagcgctacccgaaccgcatcttcgccgacgactcggccttcagcgaggcc
gacctgtcgttcgtcgacttcgactcgttctcgagcgacgagttcacgggcggttcgaac
aacacctccggcggcacctacagctga
DBGET
integrated database retrieval system
