Microcella alkaliphila: MalAC0309_0748
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Entry
MalAC0309_0748 CDS
T05359
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
malk
Microcella alkaliphila
Brite
KEGG Orthology (KO) [BR:
malk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
malk03019
]
MalAC0309_0748
Enzymes [BR:
malk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MalAC0309_0748
Messenger RNA biogenesis [BR:
malk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MalAC0309_0748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
SLFN-g3_helicase
T2SSE
AAA_30
UvrD-helicase
PhoH
FtsK_SpoIIIE
ResIII
NACHT
Motif
Other DBs
NCBI-ProteinID:
BAU31616
UniProt:
A0A0U5B6T5
LinkDB
All DBs
Position
complement(754980..758912)
Genome browser
AA seq
1310 aa
AA seq
DB search
MIAAAAPGAAPRIHYPPDLPVSQRRDDILEALRDNQVVIVAGETGSGKTTQLPKMLLELG
YERIAHTQPRRIAARTIAERVAEELGTRVGETVGYKVRFTDEVTDATRLTLMTDGILLAA
LRGDRELNRYDAIIIDEAHERSLTIDFLLGYLKQLLPRRPDLKLVITSATIDPESFAKHF
AAGDGTPAPIIEVSGRTYPVEIRYRPLVPDADVPGDDGDESDGADAPSTPDDAIDMIEGV
IAAVDELERDTDGDVLVFFSGENEIRDAADALRGHFQKRGPRGAATEVLPLYGRLSAAEQ
HRVFERPAPGIHRRIILATNVAETSLTVPGIRSVVDTGTARISRYSARAKVQRLPIEPIS
QASANQRSGRAGRTSDGIAIRLYSQLDFDKRPAFTDPEILRTNLAAVILQMISLGLGDIE
RFPFLQPPDKRGVKDGVDLLLELGAIDKRGDELRITHVGRAIAPLPLDPRYARMVVEAQK
LGVAREVIAIVAGLSIQDPRERPAEHREKADQLHGRFRDPTSDFITLLNLWKHLQRRQKE
LSGNAFRREVRGEFLNYLRIREWQDVERQVRRLLPKDAVRGGAMPETSDADAIHRALLSG
LLSHIGLRDDRDAGSPTSTNKGRDGRSPGRAARGREYLGARQRRFVIFPGSGLAKKQPAA
VMAAELVETSRLFARTVAQIDPAWAEPLAAHLVKRQYSEPRWEKRQGSAVVDEKVTLFGV
PIVPRRRAQLARIDAPLARELFIRHALVEGDWDTSRLDKRLTAFHRTNAQLRRELEKLEE
RQRRRDILLDDEKLVDFYDEKLPDDVTDVRRFERWWRDARREHPDLLTLTRGDLVDAEEL
PQGDDDAYPTRLTLGDQTLSVGYRFEPGSVDDGVTVTVPLPLLPRLDDAGFDWLVPGLRH
ELVTALIKTLPKSVRRNVVPAADWATRLLAEVPDGADLRELRITEFLAREIRRQTFTPVE
PDDFDLERLPAHLRMGYAVVDDRGRRLARGTDLGSLQAKLKSRTRDSVARVATAAARAPI
ERGGITVWDDTVGEGGTVPRQVEVRRAETTIRGYPALVDEGAAVALRLQVSVDDQLRAHR
AGVRRLVQLAVPSPLSYVQEHLTHAEKLSLAASPYRSTAALIDDALRAVIDAELDARGEL
PWTRADFESVRDAVNRGLPDRLFRIVATAASVLAAAREADVAISRSSSLSLMAPLADCRA
QLGQLVFDGFIGRTGLERLPRLVVYLRGIVHRVEKLADNPGRDRAGQTEFESALHLFGQA
GGVLPLAADARANLVTVRWMLEELRLSLFAQPLGPHGRISVQRVRKALAG
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atgattgccgccgccgcgccgggagccgccccgcgcatccactacccaccggacctgccg
gtgtcgcagcggcgcgacgacatcctcgaggctctgcgcgacaaccaggtcgtgatcgtc
gccggcgagaccggctcgggcaagacgacgcagctgccgaagatgctgctcgaactgggc
tacgagcgcatcgcccatacacagccgcggcgcatcgccgcgcgcaccatcgccgagcgc
gtcgccgaggagctcggcacccgcgtcggcgagaccgtcggctacaaggtgcgcttcacc
gacgaagtcaccgacgcgacgcggctgacgctgatgaccgacggcatcctgctcgcggcg
ctccgcggagaccgcgagctgaaccgctacgacgcgatcatcatcgacgaggcgcacgag
cgctcgctcaccatcgacttcttgctcggctacctcaaacagctcctcccccgccgcccc
gacctgaagctcgtcatcacctcggcgacgatcgaccccgagagcttcgccaagcacttc
gcggccggcgacgggacgcccgcaccgatcatcgaggtgagcgggcgcacctacccggtc
gaaattcggtaccggccgctcgtgcccgacgccgacgtgccgggcgacgacggcgacgag
tcggacggcgccgacgcccccagcacccccgacgacgccatcgacatgatcgagggcgtc
atcgccgccgtcgacgagctcgagcgcgacaccgacggcgacgtgctcgtcttcttcagc
ggcgagaacgagatccgggatgcggcagacgcgctccgcggccacttccagaaacgcgga
ccgcgaggcgccgccaccgaggtgttgccgctctacggccggttgtcggccgccgaacag
caccgtgttttcgaaaggccggccccgggcatccatcgccgcatcattctcgcgacgaac
gtcgccgagacgagcctgacggtgccgggaatccgcagcgtcgtcgacaccggcacggcc
cgcatctcgcgctactcggcgcgggcgaaggtgcagcgcctgccgatcgaaccgatctcg
caggcgagcgccaaccaacgctccggccgcgcggggcgcaccagtgacggcattgcgatc
cggctgtactcgcagctcgacttcgacaagcggcccgcgttcaccgaccccgagattctg
cgcacgaacctcgcggcggtgatcctgcagatgatctcgctcgggctcggcgacatcgaa
cgcttccccttcctgcagccacccgacaagcgcggggtgaaggacggcgtcgacctgctg
ctcgagctcggcgcgatcgacaagcgcggcgacgagctgcgcatcacccacgtcggccgg
gcgatcgcgccgctgccacttgacccgcggtatgcgcgcatggtcgtcgaggcgcagaaa
ctcggtgtcgcgcgcgaggtcatcgcgatcgtggcggggctgagcattcaagacccgcgc
gagcggcccgccgagcatcgcgagaaggccgaccagctgcacgggcgattccgcgacccg
acgagcgacttcatcacccttctgaacctctggaagcatctgcagcggcggcagaaagag
ctgagcggcaacgcgttccggcgcgaggtgcgcggcgagttcctcaactacctgcgcatt
cgcgagtggcaggacgtcgagaggcaagtcaggcgcctgctgccgaaagacgcggtacgc
ggcggcgcgatgccggagacgagcgacgccgacgccatccaccgcgccttgctctcaggc
ctgctcagccacatcggcttgcgcgacgaccgtgacgcgggcagcccgacctcgacgaat
aagggtcgcgacggccgctcccccggccgcgccgcccgcggtcgggagtacctgggcgcg
cggcagcgtcgcttcgtgatcttccccggctcggggctggcgaaaaagcagccggccgct
gtgatggccgccgaacttgtcgagaccagccggctgtttgcccgcacggtcgcgcagatc
gaccccgcgtgggccgagcctctcgccgcccacctcgtgaagcggcagtacagcgagccg
cggtgggagaagcgccagggctccgccgtcgtcgacgagaaggtcacgctgttcggcgtg
cccatcgtgccgcgccgccgcgcgcagctggcccgcatcgacgcgccgctcgcccgcgag
ctgttcattcgccacgcgctcgtcgagggcgactgggacacttcgcgcctcgacaagcgc
cttaccgcgttccaccgcacgaacgcgcagctgcgccgcgagctcgaaaaactcgaggag
cggcagcgtcgccgcgacatcctgctcgacgacgagaagctcgtcgacttctacgacgag
aaactgcccgacgacgtgaccgacgtgcgccgctttgaacggtggtggcgggatgcgcgc
cgcgagcatcccgatctgctcacgctgacaagaggcgacctcgtcgacgcggaggagctt
ccgcagggcgacgacgacgcgtacccgacccggctgacgctcggcgatcagacactgagt
gtcggctatcgcttcgagcccggcagtgtcgacgacggcgtgacggtcacggtgccgctg
ccgctgttgccgcgactcgacgacgccggcttcgactggctggtgccgggcctgcgccac
gagctcgtgacggcgctcatcaagacgctgccgaagtcggttcggcgcaacgtggtgcct
gccgccgactgggcgacgcggctgctggcggaggtgcccgacggcgccgacctgcgcgag
ctgcgcatcaccgagtttctggcgcgcgagattcgccggcagacgttcacgccggtcgag
cccgacgacttcgatctcgagcgcctgcccgcgcacctgcgcatgggctacgccgtcgtc
gacgaccgcggccggcggcttgcgcgcggcaccgacctggggtcgctgcaggcgaagttg
aagagccgcacccgcgactcggtggcgcgcgtggcgacggcggcggcccgggctccgatc
gagcgcggcggcatcaccgtctgggacgacacggtcggcgagggcggcaccgtgccccga
caggtggaggtgcggcgggccgagacgacgatccgcgggtatccggcgctcgtcgacgag
ggtgcagcggtcgcgctgcgcctgcaggtgtcggtcgacgaccagctgcgagcccaccgg
gcgggagtgcggcgcctcgtgcagctggccgtgccgtcgccgctgagctacgtgcaggag
cacctgacccacgccgagaagctgtcgctggcggcctccccgtaccggtcgacggcggcg
ctgatcgacgacgcgctgcgcgccgtcatcgacgccgaattggatgctcgcggcgagctg
ccgtggacgcgcgccgacttcgagtcggtccgcgacgcggtgaaccgggggttgccggat
cgcctgttccggatcgtggcgacggcagcatccgtcttggcggcagcccgcgaggcggac
gtcgcgatcagccggagctcgtcgctgtcgctcatggcaccgctggccgactgccgcgcg
cagctggggcagctggtgtttgacggcttcatcggccgcacggggctcgagcgcctgccg
cggctggtcgtctacctgcgcggcatcgtgcaccgggtggagaagctggccgacaacccg
ggccgcgaccgcgccggtcagaccgagttcgagtcggcactgcacctgttcgggcaggcg
ggcggggtgttgccgctcgcggcggacgcacgtgccaacctggtcacggtgcggtggatg
ctcgaggagctacgcctgtcgctcttcgcccagccactcgggccgcacgggcgcatctcg
gtgcagagggtgcggaaggcgctcgcggggtag
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